Analysis of interatomic Contacts of Structural Units in PDB entry:
1FM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FM2 entry

There are 2 chains in PDB entry 1FM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7GLY 158
B
 SER 170PHE 689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1FM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 51Right-handed alpha
Helix 2
2
A
50 62Right-handed alpha
Helix 3
3
A
64 70Right-handed alpha
Helix 4
4
A
73 83Right-handed alpha
Helix 5
5
A
84 95Right-handed alpha
Helix 6
6
A
97 118Right-handed alpha
Helix 7
7
A
119 122Right-handed 310
Helix 8
8
A
123 130Right-handed 310
Helix 9
9
A
133 147Right-handed alpha
Helix 10
10
A
152 158Right-handed alpha
Helix 11
11
B
177 179Right-handed 310
Helix 12
12
B
197 200Right-handed 310
Helix 13
13
B
317 327Right-handed alpha
Helix 14
14
B
330 339Right-handed alpha
Helix 15
15
B
372 378Right-handed alpha
Helix 16
16
B
384 388Right-handed 310
Helix 17
17
B
394 398Right-handed 310
Helix 18
18
B
426 430Right-handed 310
Helix 19
19
B
441 453Right-handed alpha
Helix 20
20
B
458 467Right-handed alpha
Helix 21
21
B
471 487Right-handed alpha
Helix 22
22
B
490 502Right-handed alpha
Helix 23
23
B
513 525Right-handed alpha
Helix 24
24
B
553 573Right-handed alpha
Helix 25
25
B
578 583Right-handed alpha
Helix 26
26
B
598 602Right-handed 310
Helix 27
27
B
658 663Right-handed alpha
Helix 28
28
B
673 680Right-handed alpha
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There are 9 sheets in PDB entry 1FM2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
213 219anti-parallel
Strand 3
B
202 208anti-parallel
Strand 4
A
28 31parallel
Strand 5
A
19 23anti-parallel
Strand 6
B
681 686anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 410first strand
Strand 2
B
171 175anti-parallel
Strand 3
B
186 190anti-parallel
Strand 4
B
626 631anti-parallel
Strand 5
B
637 642anti-parallel
Strand 6
B
668 669anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
620 624anti-parallel
Strand 3
B
607 609anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 238first strand
Strand 2
B
347 352anti-parallel
Strand 3
B
357 361anti-parallel
Strand 4
B
400 402anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
305 310anti-parallel
Strand 3
B
245 249anti-parallel
Strand 4
B
379 381parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
256 259anti-parallel
Strand 3
B
262 264anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 276first strand
Strand 2
B
282 291anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
535 537first strand
Strand 2
B
549 551anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
584 587first strand
Strand 2
B
590 593anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il