Analysis of interatomic Contacts of Structural Units in PDB entry:
1FMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FMI entry

There is 1 chain in PDB entry 1FMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 239THR 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1FMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
247 268Right-handed alpha
Helix 2
2
A
288 301Right-handed alpha
Helix 3
3
A
303 318Right-handed alpha
Helix 4
4
A
328 347Right-handed alpha
Helix 5
5
A
348 363Right-handed alpha
Helix 6
6
A
364 367Right-handed 310
Helix 7
7
A
395 399Right-handed alpha
Helix 8
8
A
401 413Right-handed alpha
Helix 9
9
A
415 431Right-handed alpha
Helix 10
10
A
462 476Right-handed alpha
Helix 11
11
A
480 498Right-handed alpha
Helix 12
12
A
527 539Right-handed alpha
Helix 13
13
A
542 562Right-handed alpha
Helix 14
14
A
588 592Right-handed 310
Helix 15
15
A
598 612Right-handed alpha
Helix 16
16
A
614 631Right-handed alpha
Helix 17
17
A
657 663Right-handed alpha
Helix 18
18
A
663 672Right-handed alpha
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There are 7 sheets in PDB entry 1FMI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
280 282anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
376 378anti-parallel
Strand 3
A
384 385anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
442 443anti-parallel
Strand 3
A
450 451anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
512 514anti-parallel
Strand 3
A
517 519anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 501first strand
Strand 2
A
508 510anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 523first strand
Strand 2
A
571 574anti-parallel
Strand 3
A
585 586anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 686first strand
Strand 2
A
692 694anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il