Analysis of interatomic Contacts of Structural Units in PDB entry:
1FMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FMJ entry

There are 2 chains in PDB entry 1FMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8MET 349
B
 PRO 8MET 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 1FMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 26Right-handed alpha
Helix 2
2
A
49 59Right-handed alpha
Helix 3
3
A
75 88Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
98 103Right-handed alpha
Helix 6
6
A
107 112Right-handed 310
Helix 7
7
A
113 117Right-handed 310
Helix 8
8
A
116 120Right-handed 310
Helix 9
9
A
126 130Right-handed 310
Helix 10
10
A
131 142Right-handed alpha
Helix 11
11
A
145 153Right-handed alpha
Helix 12
12
A
166 170Right-handed 310
Helix 13
13
A
173 177Right-handed 310
Helix 14
14
A
186 201Right-handed alpha
Helix 15
15
A
209 219Right-handed alpha
Helix 16
16
A
226 236Right-handed alpha
Helix 17
17
A
248 255Right-handed alpha
Helix 18
18
A
254 266Right-handed alpha
Helix 19
19
A
271 282Right-handed alpha
Helix 20
20
A
283 289Right-handed alpha
Helix 21
21
A
295 299Right-handed 310
Helix 22
22
A
317 322Right-handed 310
Helix 23
23
A
324 339Right-handed alpha
Helix 24
24
B
17 26Right-handed alpha
Helix 25
25
B
49 59Right-handed alpha
Helix 26
26
B
75 88Right-handed alpha
Helix 27
27
B
93 97Right-handed 310
Helix 28
28
B
98 103Right-handed alpha
Helix 29
29
B
107 112Right-handed 310
Helix 30
30
B
113 117Right-handed 310
Helix 31
31
B
116 120Right-handed 310
Helix 32
32
B
126 130Right-handed 310
Helix 33
33
B
131 142Right-handed alpha
Helix 34
34
B
145 153Right-handed alpha
Helix 35
35
B
166 170Right-handed 310
Helix 36
36
B
173 177Right-handed 310
Helix 37
37
B
186 201Right-handed alpha
Helix 38
38
B
209 219Right-handed alpha
Helix 39
39
B
226 236Right-handed alpha
Helix 40
40
B
248 255Right-handed alpha
Helix 41
41
B
254 266Right-handed alpha
Helix 42
42
B
271 282Right-handed alpha
Helix 43
43
B
283 289Right-handed alpha
Helix 44
44
B
295 299Right-handed 310
Helix 45
45
B
317 322Right-handed 310
Helix 46
46
B
324 339Right-handed alpha
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There are 4 sheets in PDB entry 1FMJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
43 46anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
160 163parallel
Strand 3
A
66 70parallel
Strand 4
A
179 184parallel
Strand 5
A
243 247parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
43 46anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
160 163parallel
Strand 3
B
66 70parallel
Strand 4
B
179 184parallel
Strand 5
B
243 247parallel
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