Analysis of interatomic Contacts of Structural Units in PDB entry:
1FMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FMT entry

There are 2 chains in PDB entry 1FMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1VAL 314
B
 GLU 2VAL 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 1FMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
50 57Right-handed alpha
Helix 3
3
A
71 79Right-handed alpha
Helix 4
4
A
96 101Right-handed alpha
Helix 5
5
A
122 129Right-handed alpha
Helix 6
6
A
164 188Right-handed alpha
Helix 7
7
A
198 200Right-handed 310
Helix 8
8
A
209 212Right-handed alpha
Helix 9
9
A
220 229Right-handed alpha
Helix 10
10
A
296 302Right-handed alpha
Helix 11
11
A
304 306Right-handed 310
Helix 12
12
B
13 24Right-handed alpha
Helix 13
13
B
50 57Right-handed alpha
Helix 14
14
B
71 80Right-handed alpha
Helix 15
15
B
96 99Right-handed alpha
Helix 16
16
B
122 128Right-handed alpha
Helix 17
17
B
164 188Right-handed alpha
Helix 18
18
B
198 200Right-handed 310
Helix 19
19
B
209 212Right-handed alpha
Helix 20
20
B
220 229Right-handed alpha
Helix 21
21
B
296 307Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1FMT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 157first strand
Strand 2
A
133 140anti-parallel
Strand 3
A
106 110anti-parallel
Strand 4
A
84 88parallel
Strand 5
A
5 10parallel
Strand 6
A
28 33parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
243 249anti-parallel
Strand 3
A
285 288anti-parallel
Strand 4
A
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
280 283anti-parallel
Strand 3
A
271 275anti-parallel
Strand 4
A
264 268anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 157first strand
Strand 2
B
133 140anti-parallel
Strand 3
B
106 110anti-parallel
Strand 4
B
84 88parallel
Strand 5
B
5 10parallel
Strand 6
B
28 33parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 240first strand
Strand 2
B
243 249anti-parallel
Strand 3
B
285 288anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 253first strand
Strand 2
B
280 283anti-parallel
Strand 3
B
271 275anti-parallel
Strand 4
B
264 268anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il