Analysis of interatomic Contacts of Structural Units in PDB entry:
1FMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FMU entry

There is 1 chain in PDB entry 1FMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ILE 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1FMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 52Right-handed alpha
Helix 2
2
A
109 115Right-handed alpha
Helix 3
3
A
125 129Right-handed 310
Helix 4
4
A
129 133Right-handed 310
Helix 5
5
A
135 143Right-handed alpha
Helix 6
6
A
174 177Right-handed 310
Helix 7
7
A
226 237Right-handed alpha
Helix 8
8
A
250 257Right-handed 310
Helix 9
9
A
304 309Right-handed alpha
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There are 4 sheets in PDB entry 1FMU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
167 170anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
311 316anti-parallel
Strand 5
A
321 326anti-parallel
Strand 6
A
183 186anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
25 32anti-parallel
Strand 4
A
119 122parallel
Strand 5
A
38 41anti-parallel
Strand 6
A
94 106parallel
Strand 7
A
81 91anti-parallel
Strand 8
A
70 72anti-parallel
Strand 9
A
81 91anti-parallel
Strand 10
A
13 20anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 271first strand
Strand 2
A
260 264anti-parallel
Strand 3
A
194 202anti-parallel
Strand 4
A
205 208anti-parallel
Strand 5
A
194 202anti-parallel
Strand 6
A
213 216anti-parallel
Strand 7
A
300 303parallel
Strand 8
A
223 225anti-parallel
Strand 9
A
288 290parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
283 286anti-parallel
Strand 3
A
277 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il