Analysis of interatomic Contacts of Structural Units in PDB entry:
1FN7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FN7 entry

There are 4 chains in PDB entry 1FN7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 C 15
D
 G 16 A 22
D
 G 24 C 30
A
 GLY 9GLN 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 1FN7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
34 39Right-handed alpha
Helix 3
3
A
89 100Right-handed alpha
Helix 4
4
A
105 117Right-handed alpha
Helix 5
5
A
117 125Right-handed alpha
Helix 6
6
A
126 128Right-handed 310
Helix 7
7
A
136 146Right-handed alpha
Helix 8
8
A
151 167Right-handed alpha
Helix 9
9
A
183 189Right-handed alpha
Helix 10
10
A
191 198Right-handed alpha
Helix 11
11
A
199 200Right-handed 310
Helix 12
12
A
201 202Right-handed 310
Helix 13
13
A
203 219Right-handed alpha
Helix 14
14
A
221 229Right-handed alpha
Helix 15
15
A
232 241Right-handed alpha
Helix 16
16
A
247 259Right-handed alpha
Helix 17
17
A
268 280Right-handed alpha
Helix 18
18
A
292 308Right-handed alpha
Helix 19
19
A
310 324Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1FN7. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
54 59anti-parallel
Strand 5
A
48 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
176 179anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il