Analysis of interatomic Contacts of Structural Units in PDB entry:
1FNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FNM entry

There is 1 chain in PDB entry 1FNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ILE 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1FNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 10Right-handed 310
Helix 2
2
A
24 37Right-handed alpha
Helix 3
3
A
90 101Right-handed alpha
Helix 4
4
A
115 128Right-handed alpha
Helix 5
5
A
145 158Right-handed alpha
Helix 6
6
A
202 222Right-handed alpha
Helix 7
7
A
224 234Right-handed alpha
Helix 8
8
A
238 252Right-handed alpha
Helix 9
9
A
268 280Right-handed alpha
Helix 10
10
A
418 435Right-handed alpha
Helix 11
11
A
455 468Right-handed alpha
Helix 12
12
A
535 537Right-handed 310
Helix 13
13
A
538 550Right-handed alpha
Helix 14
14
A
578 597Right-handed alpha
Helix 15
15
A
617 627Right-handed alpha
Helix 16
16
A
650 652Right-handed 310
Helix 17
17
A
654 663Right-handed alpha
Helix 18
18
A
680 688Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1FNM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
77 82parallel
Strand 3
A
69 74anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
104 109parallel
Strand 3
A
132 137parallel
Strand 4
A
256 260parallel
Strand 5
A
161 163parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
176 179anti-parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
196 197anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
298 301anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 366first strand
Strand 2
A
349 358anti-parallel
Strand 3
A
339 343anti-parallel
Strand 4
A
388 390anti-parallel
Strand 5
A
310 319anti-parallel
Strand 6
A
323 332anti-parallel
Strand 7
A
374 379anti-parallel
Strand 8
A
349 358anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 336first strand
Strand 2
A
368 370anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 442first strand
Strand 2
A
449 453anti-parallel
Strand 3
A
409 415anti-parallel
Strand 4
A
474 476anti-parallel
Strand 5
A
409 415anti-parallel
Strand 6
A
480 481anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 678first strand
Strand 2
A
600 613anti-parallel
Strand 3
A
484 486anti-parallel
Strand 4
A
600 613anti-parallel
Strand 5
A
640 648anti-parallel
Strand 6
A
630 637anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 499first strand
Strand 2
A
506 516anti-parallel
Strand 3
A
563 571anti-parallel
Strand 4
A
523 527parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il