Analysis of interatomic Contacts of Structural Units in PDB entry:
1FNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FNY entry

There is 1 chain in PDB entry 1FNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLY 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1FNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
103 107Right-handed 310
Helix 2
2
A
172 174Right-handed 310
Helix 3
3
A
197 202Right-handed alpha
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There are 5 sheets in PDB entry 1FNY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 195first strand
Strand 2
A
176 183anti-parallel
Strand 3
A
164 171anti-parallel
Strand 4
A
68 76anti-parallel
Strand 5
A
225 235anti-parallel
Strand 6
A
2 8anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 195first strand
Strand 2
A
176 183anti-parallel
Strand 3
A
164 171anti-parallel
Strand 4
A
68 76anti-parallel
Strand 5
A
225 235anti-parallel
Strand 6
A
32 33anti-parallel
Strand 7
A
25 26anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
140 145anti-parallel
Strand 3
A
122 127anti-parallel
Strand 4
A
87 95anti-parallel
Strand 5
A
205 214anti-parallel
Strand 6
A
47 52anti-parallel
Strand 7
A
18 22anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
140 145anti-parallel
Strand 3
A
122 127anti-parallel
Strand 4
A
87 95anti-parallel
Strand 5
A
205 214anti-parallel
Strand 6
A
56 57anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
41 42anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il