Analysis of interatomic Contacts of Structural Units in PDB entry:
1FPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FPM entry

There are 2 chains in PDB entry 1FPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7GLY 557
B
 ILE 8GLY 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 1FPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 25Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
44 52Right-handed alpha
Helix 4
4
A
73 88Right-handed alpha
Helix 5
5
A
101 108Right-handed alpha
Helix 6
6
A
121 126Right-handed alpha
Helix 7
7
A
131 153Right-handed alpha
Helix 8
8
A
160 164Right-handed 310
Helix 9
9
A
174 179Right-handed 310
Helix 10
10
A
203 210Right-handed alpha
Helix 11
11
A
214 223Right-handed alpha
Helix 12
12
A
243 252Right-handed alpha
Helix 13
13
A
284 294Right-handed alpha
Helix 14
14
A
308 316Right-handed alpha
Helix 15
15
A
316 322Right-handed alpha
Helix 16
16
A
333 341Right-handed alpha
Helix 17
17
A
345 350Right-handed 310
Helix 18
18
A
352 372Right-handed alpha
Helix 19
19
A
388 399Right-handed alpha
Helix 20
20
A
408 415Right-handed alpha
Helix 21
21
A
416 418Right-handed 310
Helix 22
22
A
419 433Right-handed alpha
Helix 23
23
A
446 458Right-handed alpha
Helix 24
24
A
467 480Right-handed alpha
Helix 25
25
A
542 546Right-handed 310
Helix 26
26
B
18 25Right-handed alpha
Helix 27
27
B
29 31Right-handed 310
Helix 28
28
B
45 51Right-handed alpha
Helix 29
29
B
73 81Right-handed alpha
Helix 30
30
B
81 86Right-handed alpha
Helix 31
31
B
87 89Right-handed 310
Helix 32
32
B
101 106Right-handed 310
Helix 33
33
B
121 127Right-handed alpha
Helix 34
34
B
131 154Right-handed alpha
Helix 35
35
B
174 178Right-handed 310
Helix 36
36
B
203 211Right-handed alpha
Helix 37
37
B
214 224Right-handed alpha
Helix 38
38
B
238 242Right-handed alpha
Helix 39
39
B
243 252Right-handed alpha
Helix 40
40
B
284 294Right-handed alpha
Helix 41
41
B
308 316Right-handed alpha
Helix 42
42
B
316 322Right-handed alpha
Helix 43
43
B
333 340Right-handed alpha
Helix 44
44
B
344 348Right-handed 310
Helix 45
45
B
354 372Right-handed alpha
Helix 46
46
B
388 399Right-handed alpha
Helix 47
47
B
408 415Right-handed alpha
Helix 48
48
B
419 432Right-handed alpha
Helix 49
49
B
446 458Right-handed alpha
Helix 50
50
B
467 481Right-handed alpha
Helix 51
51
B
542 547Right-handed alpha
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There are 19 sheets in PDB entry 1FPM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
41 43anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
267 270anti-parallel
Strand 3
A
92 96parallel
Strand 4
A
297 301parallel
Strand 5
A
58 64parallel
Strand 6
A
327 332parallel
Strand 7
A
377 382parallel
Strand 8
A
406 407parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
117 119anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
197 199parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
193 195anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
235 237anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 466first strand
Strand 2
A
510 513parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 519first strand
Strand 2
A
523 525anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 549first strand
Strand 2
A
554 555anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
41 43anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
327 330parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
B
92 96parallel
Strand 3
B
297 300parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
197 199parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
193 195anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
B
235 237anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 382first strand
Strand 2
B
404 407parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 466first strand
Strand 2
B
511 513parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 490first strand
Strand 2
B
524 527parallel
Strand 3
B
517 518anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
548 549first strand
Strand 2
B
554 555anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il