Analysis of interatomic Contacts of Structural Units in PDB entry:
1FPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FPQ entry

There is 1 chain in PDB entry 1FPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20LYS 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1FPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
35 47Right-handed alpha
Helix 3
3
A
48 55Right-handed alpha
Helix 4
4
A
64 70Right-handed alpha
Helix 5
5
A
71 72Right-handed 310
Helix 6
6
A
73 77Right-handed 310
Helix 7
7
A
80 95Right-handed alpha
Helix 8
8
A
119 124Right-handed 310
Helix 9
9
A
132 140Right-handed alpha
Helix 10
10
A
141 149Right-handed alpha
Helix 11
11
A
150 157Right-handed alpha
Helix 12
12
A
180 204Right-handed alpha
Helix 13
13
A
221 229Right-handed alpha
Helix 14
14
A
241 246Right-handed alpha
Helix 15
15
A
276 280Right-handed 310
Helix 16
16
A
281 295Right-handed alpha
Helix 17
17
A
316 333Right-handed alpha
Helix 18
18
A
340 350Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1FPQ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 104first strand
Strand 2
A
110 116anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 361first strand
Strand 2
A
365 371anti-parallel
Strand 3
A
296 309anti-parallel
Strand 4
A
268 274parallel
Strand 5
A
212 216parallel
Strand 6
A
235 240parallel
Strand 7
A
254 258parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 361first strand
Strand 2
A
365 371anti-parallel
Strand 3
A
296 309anti-parallel
Strand 4
A
338 339parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il