Analysis of interatomic Contacts of Structural Units in PDB entry:
1FQ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FQ3 entry

There are 2 chains in PDB entry 1FQ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16TYR 245
B
 ILE 16TYR 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1FQ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
164 169Right-handed alpha
Helix 3
3
A
230 242Right-handed alpha
Helix 4
4
B
55 59Right-handed 310
Helix 5
5
B
164 171Right-handed alpha
Helix 6
6
B
230 242Right-handed alpha
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There are 5 sheets in PDB entry 1FQ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
35 37anti-parallel
Strand 3
A
63 68anti-parallel
Strand 4
A
30 32anti-parallel
Strand 5
A
43 48anti-parallel
Strand 6
A
51 54anti-parallel
Strand 7
A
104 108anti-parallel
Strand 8
A
81 88anti-parallel
Strand 9
A
63 68anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
159 161anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
228 229anti-parallel
Strand 3
A
212 213anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 108first strand
Strand 2
B
81 88anti-parallel
Strand 3
B
64 68anti-parallel
Strand 4
B
30 36anti-parallel
Strand 5
B
39 48anti-parallel
Strand 6
B
51 54anti-parallel
Strand 7
B
104 108anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
135 138anti-parallel
Strand 3
B
198 200anti-parallel
Strand 4
B
209 215anti-parallel
Strand 5
B
227 229anti-parallel
Strand 6
B
180 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il