Analysis of interatomic Contacts of Structural Units in PDB entry:
1FRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FRV entry

There are 4 chains in PDB entry 1FRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ALA 264
B
 ASN 7HIS 536
C
 ALA 3ALA 264
D
 ASN 7HIS 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 78 helices in PDB entry 1FRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed alpha
Helix 2
2
A
32 36Right-handed alpha
Helix 3
3
A
53 65Right-handed alpha
Helix 4
4
A
92 102Right-handed alpha
Helix 5
5
A
110 114Right-handed alpha
Helix 6
6
A
118 120Right-handed 310
Helix 7
7
A
131 133Right-handed 310
Helix 8
8
A
152 162Right-handed alpha
Helix 9
9
A
177 180Right-handed alpha
Helix 10
10
A
185 187Right-handed 310
Helix 11
11
A
189 196Right-handed 310
Helix 12
12
A
206 210Right-handed alpha
Helix 13
13
A
221 223Right-handed 310
Helix 14
14
A
233 235Right-handed 310
Helix 15
15
B
45 49Right-handed alpha
Helix 16
16
B
54 64Right-handed alpha
Helix 17
17
B
71 83Right-handed alpha
Helix 18
18
B
90 119Right-handed alpha
Helix 19
19
B
123 127Right-handed alpha
Helix 20
20
B
131 141Right-handed alpha
Helix 21
21
B
148 161Right-handed alpha
Helix 22
22
B
186 196Right-handed alpha
Helix 23
23
B
199 214Right-handed alpha
Helix 24
24
B
232 234Right-handed 310
Helix 25
25
B
236 255Right-handed alpha
Helix 26
26
B
257 267Right-handed alpha
Helix 27
27
B
269 273Right-handed 310
Helix 28
28
B
293 295Right-handed 310
Helix 29
29
B
336 338Right-handed 310
Helix 30
30
B
350 352Right-handed 310
Helix 31
31
B
371 381Right-handed alpha
Helix 32
32
B
384 397Right-handed alpha
Helix 33
33
B
401 403Right-handed 310
Helix 34
34
B
407 417Right-handed alpha
Helix 35
35
B
424 438Right-handed 310
Helix 36
36
B
485 489Right-handed alpha
Helix 37
37
B
501 506Right-handed alpha
Helix 38
38
B
514 516Right-handed 310
Helix 39
39
B
518 524Right-handed alpha
Helix 40
40
B
531 535Right-handed alpha
Helix 41
41
C
19 26Right-handed alpha
Helix 42
42
C
32 38Right-handed alpha
Helix 43
43
C
53 64Right-handed alpha
Helix 44
44
C
92 99Right-handed alpha
Helix 45
45
C
111 115Right-handed alpha
Helix 46
46
C
131 134Right-handed alpha
Helix 47
47
C
152 164Right-handed alpha
Helix 48
48
C
184 187Right-handed alpha
Helix 49
49
C
189 196Right-handed 310
Helix 50
50
C
206 209Right-handed alpha
Helix 51
51
C
215 217Right-handed 310
Helix 52
52
C
221 223Right-handed 310
Helix 53
53
C
228 231Right-handed alpha
Helix 54
54
C
254 257Right-handed alpha
Helix 55
55
D
45 48Right-handed alpha
Helix 56
56
D
54 64Right-handed 310
Helix 57
57
D
71 84Right-handed alpha
Helix 58
58
D
90 112Right-handed alpha
Helix 59
59
D
117 119Right-handed 310
Helix 60
60
D
123 127Right-handed alpha
Helix 61
61
D
131 141Right-handed alpha
Helix 62
62
D
148 164Right-handed alpha
Helix 63
63
D
186 202Right-handed alpha
Helix 64
64
D
204 214Right-handed alpha
Helix 65
65
D
232 234Right-handed 310
Helix 66
66
D
236 273Right-handed alpha
Helix 67
67
D
293 295Right-handed 310
Helix 68
68
D
316 318Right-handed 310
Helix 69
69
D
336 338Right-handed 310
Helix 70
70
D
350 352Right-handed 310
Helix 71
71
D
371 379Right-handed alpha
Helix 72
72
D
384 397Right-handed alpha
Helix 73
73
D
403 405Right-handed 310
Helix 74
74
D
407 438Right-handed alpha
Helix 75
75
D
485 487Right-handed 310
Helix 76
76
D
501 506Right-handed alpha
Helix 77
77
D
518 527Right-handed alpha
Helix 78
78
D
531 534Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1FRV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
105 109parallel
Strand 3
A
68 73parallel
Strand 4
A
8 13parallel
Strand 5
A
42 45parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
21 26anti-parallel
Strand 3
B
36 39anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 282first strand
Strand 2
B
301 303anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 461first strand
Strand 2
B
464 473anti-parallel
Strand 3
B
476 483anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
69 73parallel
Strand 3
C
105 109parallel
Strand 4
C
143 145parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 11first strand
Strand 2
D
21 26anti-parallel
Strand 3
D
36 39anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
280 282first strand
Strand 2
D
301 303anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
320 322first strand
Strand 2
D
359 361anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
452 461first strand
Strand 2
D
464 473anti-parallel
Strand 3
D
476 483anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il