Analysis of interatomic Contacts of Structural Units in PDB entry:
1FSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FSJ entry

There are 4 chains in PDB entry 1FSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1LYS 134
C
 SER 203LYS 334
D
 SER 403LYS 534
E
 SER 603LYS 734
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1FSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
3 7Right-handed 310
Helix 2
2
B
21 26Right-handed 310
Helix 3
3
B
35 43Right-handed alpha
Helix 4
4
B
49 64Right-handed alpha
Helix 5
5
B
64 69Right-handed alpha
Helix 6
6
B
72 81Right-handed alpha
Helix 7
7
B
88 92Right-handed 310
Helix 8
8
B
106 110Right-handed 310
Helix 9
9
B
123 131Right-handed alpha
Helix 10
10
C
221 228Right-handed 310
Helix 11
11
C
235 243Right-handed alpha
Helix 12
12
C
249 263Right-handed alpha
Helix 13
13
C
264 269Right-handed alpha
Helix 14
14
C
272 281Right-handed alpha
Helix 15
15
C
288 292Right-handed 310
Helix 16
16
C
306 310Right-handed 310
Helix 17
17
C
323 331Right-handed alpha
Helix 18
18
D
403 407Right-handed 310
Helix 19
19
D
421 428Right-handed 310
Helix 20
20
D
435 443Right-handed alpha
Helix 21
21
D
449 463Right-handed alpha
Helix 22
22
D
464 469Right-handed alpha
Helix 23
23
D
472 481Right-handed alpha
Helix 24
24
D
488 492Right-handed 310
Helix 25
25
D
506 510Right-handed 310
Helix 26
26
D
523 531Right-handed alpha
Helix 27
27
E
603 607Right-handed 310
Helix 28
28
E
621 626Right-handed 310
Helix 29
29
E
635 643Right-handed alpha
Helix 30
30
E
649 664Right-handed alpha
Helix 31
31
E
672 681Right-handed alpha
Helix 32
32
E
688 692Right-handed 310
Helix 33
33
E
706 710Right-handed 310
Helix 34
34
E
723 731Right-handed alpha
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There are 8 sheets in PDB entry 1FSJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
46 47anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
119 122anti-parallel
Strand 3
B
100 103anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 210first strand
Strand 2
C
246 247anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
232 233first strand
Strand 2
C
319 322anti-parallel
Strand 3
C
300 303anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
409 410first strand
Strand 2
D
446 447anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
432 433first strand
Strand 2
D
519 522anti-parallel
Strand 3
D
500 503anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
609 610first strand
Strand 2
E
646 647anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
632 633first strand
Strand 2
E
719 722anti-parallel
Strand 3
E
700 703anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il