Analysis of interatomic Contacts of Structural Units in PDB entry:
1FYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FYR entry

There are 8 chains in PDB entry 1FYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 58GLU 152
B
 MET 55GLU 152
C
 MET 55GLU 152
D
 HIS 58GLU 152
I
 VAL 1VAL 3
J
 VAL 1VAL 3
K
 VAL 1VAL 3
L
 VAL 1VAL 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 1FYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 76Right-handed alpha
Helix 2
2
A
127 135Right-handed alpha
Helix 3
3
B
66 76Right-handed alpha
Helix 4
4
B
127 138Right-handed alpha
Helix 5
5
C
66 75Right-handed alpha
Helix 6
6
C
127 135Right-handed alpha
Helix 7
7
D
66 75Right-handed alpha
Helix 8
8
D
127 135Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 1FYR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
95 101anti-parallel
Strand 3
A
104 112anti-parallel
Strand 4
A
118 119anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
95 101anti-parallel
Strand 3
B
104 109anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
118 119anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 64first strand
Strand 2
C
83 87parallel
Strand 3
C
95 101anti-parallel
Strand 4
C
104 109anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
118 119anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 150first strand
Strand 2
D
82 87parallel
Strand 3
D
95 101anti-parallel
Strand 4
D
104 109anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 112first strand
Strand 2
D
118 119anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il