Analysis of interatomic Contacts of Structural Units in PDB entry:
1G0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G0D entry

There is 1 chain in PDB entry 1G0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 6LYS 684
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1G0D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
14 22Right-handed alpha
Helix 2
2
A
147 155Right-handed alpha
Helix 3
3
A
183 194Right-handed alpha
Helix 4
4
A
195 201Right-handed alpha
Helix 5
5
A
201 209Right-handed alpha
Helix 6
6
A
211 224Right-handed alpha
Helix 7
7
A
245 249Right-handed 310
Helix 8
8
A
252 262Right-handed alpha
Helix 9
9
A
271 287Right-handed alpha
Helix 10
10
A
299 303Right-handed 310
Helix 11
11
A
373 378Right-handed alpha
Helix 12
12
A
386 396Right-handed alpha
Helix 13
13
A
436 441Right-handed alpha
Helix 14
14
A
446 457Right-handed alpha
Helix 15
15
A
545 550Right-handed alpha
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There are 12 sheets in PDB entry 1G0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
8 12first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
83 89anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 72first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
106 115anti-parallel
Strand 4
A
121 124anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 72first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
106 115anti-parallel
Strand 4
A
128 133anti-parallel
Strand 5
A
33 35parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
159 166first strand
Strand 2
A
169 176anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
232 234first strand
Strand 2
A
267 270parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
368 372first strand
Strand 2
A
350 355anti-parallel
Strand 3
A
329 339anti-parallel
Strand 4
A
290 298anti-parallel
Strand 5
A
424 426anti-parallel
Strand 6
A
433 435anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
307 312first strand
Strand 2
A
397 403parallel
Strand 3
A
409 411anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
413 414first strand
Strand 2
A
574 581parallel
Strand 3
A
558 566anti-parallel
Strand 4
A
502 513anti-parallel
Strand 5
A
525 532anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
473 479first strand
Strand 2
A
488 496anti-parallel
Strand 3
A
537 544anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
588 590first strand
Strand 2
A
601 608anti-parallel
Strand 3
A
644 651anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
595 596first strand
Strand 2
A
673 682parallel
Strand 3
A
657 666anti-parallel
Strand 4
A
619 624anti-parallel
Strand 5
A
628 634anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
615 616first strand
Strand 2
A
638 639anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il