Analysis of interatomic Contacts of Structural Units in PDB entry:
1G0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G0Y entry

There are 2 chains in PDB entry 1G0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 CYS 6THR 315
I
 GLU 1LEU 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1G0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
R
70 74Right-handed 310
Helix 2
2
R
106 110Right-handed 310
Helix 3
3
R
128 132Right-handed 310
Helix 4
4
I
5 12Right-handed alpha
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There are 7 sheets in PDB entry 1G0Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
38 41first strand
Strand 2
R
78 82anti-parallel
Strand 3
R
87 91anti-parallel
Strand 4
R
8 11parallel
Strand 5
R
217 220anti-parallel
Strand 6
R
303 311parallel
Strand 7
R
293 298anti-parallel
Strand 8
R
240 245anti-parallel
Strand 9
R
248 249anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
15 18first strand
Strand 2
R
94 97parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
23 25first strand
Strand 2
R
63 66anti-parallel
Strand 3
R
57 60anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
112 113first strand
Strand 2
I
13 14anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
123 124first strand
Strand 2
R
163 166anti-parallel
Strand 3
R
157 160anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
148 149first strand
Strand 2
R
142 145anti-parallel
Strand 3
R
175 184anti-parallel
Strand 4
R
189 198anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
210 211first strand
Strand 2
R
227 235anti-parallel
Strand 3
R
273 281anti-parallel
Strand 4
R
257 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il