Analysis of interatomic Contacts of Structural Units in PDB entry:
1G16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G16 entry

There are 4 chains in PDB entry 1G16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ILE 184
B
 SER 19SER 186
C
 SER 19ASP 185
D
 ILE 20SER 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 1G16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 43Right-handed alpha
Helix 2
2
A
78 82Right-handed 310
Helix 3
3
A
86 91Right-handed alpha
Helix 4
4
A
104 110Right-handed alpha
Helix 5
5
A
110 122Right-handed alpha
Helix 6
6
A
143 155Right-handed alpha
Helix 7
7
A
168 183Right-handed alpha
Helix 8
8
B
32 42Right-handed alpha
Helix 9
9
B
86 91Right-handed alpha
Helix 10
10
B
104 110Right-handed alpha
Helix 11
11
B
110 120Right-handed alpha
Helix 12
12
B
143 155Right-handed alpha
Helix 13
13
B
168 186Right-handed alpha
Helix 14
14
C
32 43Right-handed alpha
Helix 15
15
C
77 85Right-handed 310
Helix 16
16
C
86 91Right-handed alpha
Helix 17
17
C
104 110Right-handed alpha
Helix 18
18
C
110 122Right-handed alpha
Helix 19
19
C
143 155Right-handed alpha
Helix 20
20
C
168 185Right-handed alpha
Helix 21
21
D
32 43Right-handed alpha
Helix 22
22
D
77 84Right-handed 310
Helix 23
23
D
104 110Right-handed alpha
Helix 24
24
D
110 122Right-handed alpha
Helix 25
25
D
143 155Right-handed alpha
Helix 26
26
D
168 186Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1G16. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
68 74anti-parallel
Strand 3
A
20 27parallel
Strand 4
A
93 101parallel
Strand 5
A
127 133parallel
Strand 6
A
158 160parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 63first strand
Strand 2
B
68 75anti-parallel
Strand 3
B
21 26parallel
Strand 4
B
93 101parallel
Strand 5
B
127 133parallel
Strand 6
B
158 160parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 63first strand
Strand 2
C
68 74anti-parallel
Strand 3
C
20 26parallel
Strand 4
C
95 101parallel
Strand 5
C
127 133parallel
Strand 6
C
158 160parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 64first strand
Strand 2
D
67 74anti-parallel
Strand 3
D
21 26parallel
Strand 4
D
95 101parallel
Strand 5
D
127 133parallel
Strand 6
D
158 160parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il