Analysis of interatomic Contacts of Structural Units in PDB entry:
1G2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G2D entry

There are 6 chains in PDB entry 1G2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 G 2 G 17
B
 T 18 C 33
D
 G 52 G 67
E
 T 68 C 83
C
 MET 101LYS 189
F
 MET 201GLN 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1G2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
118 131Right-handed alpha
Helix 2
2
C
146 159Right-handed alpha
Helix 3
3
C
174 183Right-handed alpha
Helix 4
4
C
184 187Right-handed 310
Helix 5
5
F
218 231Right-handed alpha
Helix 6
6
F
246 259Right-handed alpha
Helix 7
7
F
274 283Right-handed alpha
Helix 8
8
F
284 286Right-handed 310
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There are 6 sheets in PDB entry 1G2D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
115 116anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 136first strand
Strand 2
C
143 144anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 164first strand
Strand 2
C
171 172anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
205 206first strand
Strand 2
F
215 216anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
235 236first strand
Strand 2
F
243 244anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
263 264first strand
Strand 2
F
271 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il