Analysis of interatomic Contacts of Structural Units in PDB entry:
1G5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G5B entry

There are 3 chains in PDB entry 1G5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 219
B
 MET 1ALA 221
C
 MET 1ALA 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1G5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
24 36Right-handed alpha
Helix 3
3
A
56 62Right-handed alpha
Helix 4
4
A
63 66Right-handed 310
Helix 5
5
A
74 85Right-handed alpha
Helix 6
6
A
90 95Right-handed alpha
Helix 7
7
A
96 104Right-handed 310
Helix 8
8
A
105 120Right-handed alpha
Helix 9
9
A
154 161Right-handed alpha
Helix 10
10
A
162 170Right-handed alpha
Helix 11
11
A
204 209Right-handed alpha
Helix 12
12
B
10 12Right-handed 310
Helix 13
13
B
24 36Right-handed alpha
Helix 14
14
B
56 62Right-handed alpha
Helix 15
15
B
63 66Right-handed 310
Helix 16
16
B
74 84Right-handed alpha
Helix 17
17
B
89 96Right-handed alpha
Helix 18
18
B
97 104Right-handed 310
Helix 19
19
B
105 120Right-handed alpha
Helix 20
20
B
154 161Right-handed alpha
Helix 21
21
B
162 170Right-handed alpha
Helix 22
22
B
204 209Right-handed alpha
Helix 23
23
C
10 12Right-handed 310
Helix 24
24
C
24 35Right-handed alpha
Helix 25
25
C
56 62Right-handed alpha
Helix 26
26
C
63 66Right-handed 310
Helix 27
27
C
74 84Right-handed alpha
Helix 28
28
C
89 95Right-handed alpha
Helix 29
29
C
96 104Right-handed 310
Helix 30
30
C
105 120Right-handed alpha
Helix 31
31
C
154 161Right-handed alpha
Helix 32
32
C
162 170Right-handed alpha
Helix 33
33
C
204 209Right-handed alpha
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There are 6 sheets in PDB entry 1G5B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
125 130parallel
Strand 3
A
133 137anti-parallel
Strand 4
A
181 184parallel
Strand 5
A
198 200parallel
Strand 6
A
193 195anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
43 46parallel
Strand 3
A
15 18parallel
Strand 4
A
213 217anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
125 129parallel
Strand 3
B
134 138anti-parallel
Strand 4
B
181 184parallel
Strand 5
B
198 200parallel
Strand 6
B
193 195anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
43 46parallel
Strand 3
B
15 18parallel
Strand 4
B
213 217anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 8first strand
Strand 2
C
125 129parallel
Strand 3
C
134 138anti-parallel
Strand 4
C
181 184parallel
Strand 5
C
198 200parallel
Strand 6
C
193 195anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 71first strand
Strand 2
C
43 46parallel
Strand 3
C
15 18parallel
Strand 4
C
213 217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il