Analysis of interatomic Contacts of Structural Units in PDB entry:
1G5G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1G5G entry

There are 6 chains in PDB entry 1G5G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 33	GLN 454
B	ASP 33	GLN 454
C	ASP 33	GLN 454
D	ASP 33	GLN 454
E	ASP 33	GLN 454
F	ASP 33	GLN 454

There are 58 helices in PDB entry 1G5G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	35	39	Right-handed 310
Helix 2	2	A	73	78	Right-handed alpha
Helix 3	3	A	77	105	Right-handed alpha
Helix 4	4	A	171	222	Right-handed alpha
Helix 5	5	A	221	227	Right-handed alpha
Helix 6	6	A	234	242	Right-handed alpha
Helix 7	7	A	245	254	Right-handed alpha
Helix 8	8	A	256	258	Right-handed 310
Helix 9	9	A	259	267	Right-handed alpha
Helix 10	10	A	356	364	Right-handed alpha
Helix 11	11	B	35	39	Right-handed 310
Helix 12	12	B	73	78	Right-handed alpha
Helix 13	13	B	77	105	Right-handed alpha
Helix 14	14	B	171	221	Right-handed alpha
Helix 15	15	B	221	227	Right-handed alpha
Helix 16	16	B	234	242	Right-handed alpha
Helix 17	17	B	245	254	Right-handed alpha
Helix 18	18	B	256	258	Right-handed 310
Helix 19	19	B	259	267	Right-handed alpha
Helix 20	20	B	356	364	Right-handed alpha
Helix 21	21	C	73	78	Right-handed alpha
Helix 22	22	C	77	105	Right-handed alpha
Helix 23	23	C	171	221	Right-handed alpha
Helix 24	24	C	221	227	Right-handed alpha
Helix 25	25	C	234	242	Right-handed alpha
Helix 26	26	C	245	254	Right-handed alpha
Helix 27	27	C	256	258	Right-handed 310
Helix 28	28	C	259	267	Right-handed alpha
Helix 29	29	C	356	364	Right-handed alpha
Helix 30	30	D	36	40	Right-handed 310
Helix 31	31	D	73	78	Right-handed alpha
Helix 32	32	D	77	105	Right-handed alpha
Helix 33	33	D	171	222	Right-handed alpha
Helix 34	34	D	221	227	Right-handed alpha
Helix 35	35	D	234	242	Right-handed alpha
Helix 36	36	D	245	254	Right-handed alpha
Helix 37	37	D	256	258	Right-handed 310
Helix 38	38	D	259	267	Right-handed alpha
Helix 39	39	D	356	364	Right-handed alpha
Helix 40	40	E	35	39	Right-handed 310
Helix 41	41	E	73	78	Right-handed alpha
Helix 42	42	E	77	105	Right-handed alpha
Helix 43	43	E	171	221	Right-handed alpha
Helix 44	44	E	221	227	Right-handed alpha
Helix 45	45	E	234	242	Right-handed alpha
Helix 46	46	E	245	254	Right-handed alpha
Helix 47	47	E	256	258	Right-handed 310
Helix 48	48	E	259	267	Right-handed alpha
Helix 49	49	E	356	364	Right-handed alpha
Helix 50	50	F	73	78	Right-handed alpha
Helix 51	51	F	77	105	Right-handed alpha
Helix 52	52	F	171	221	Right-handed alpha
Helix 53	53	F	221	227	Right-handed alpha
Helix 54	54	F	234	242	Right-handed alpha
Helix 55	55	F	245	254	Right-handed alpha
Helix 56	56	F	256	258	Right-handed 310
Helix 57	57	F	259	267	Right-handed alpha
Helix 58	58	F	356	364	Right-handed alpha

There are 27 sheets in PDB entry 1G5G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	344	347	anti-parallel
Strand 3	A	42	52	parallel
Strand 4	A	293	305	anti-parallel
Strand 5	A	322	325	anti-parallel
Strand 6	A	331	333	anti-parallel
Strand 7	A	352	353	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	277	first strand
Strand 2	A	282	287	anti-parallel
Strand 3	A	59	64	anti-parallel
Strand 4	B	441	444	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	270	271	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	390	392	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	444	first strand
Strand 2	C	58	64	parallel
Strand 3	C	282	288	anti-parallel
Strand 4	C	270	277	anti-parallel
Strand 5	C	231	232	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	344	347	anti-parallel
Strand 3	B	42	52	parallel
Strand 4	B	293	305	anti-parallel
Strand 5	B	322	326	anti-parallel
Strand 6	B	329	333	anti-parallel
Strand 7	B	352	353	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	270	277	anti-parallel
Strand 3	B	282	288	anti-parallel
Strand 4	B	58	68	anti-parallel
Strand 5	C	439	447	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	417	419	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	426	428	anti-parallel
Strand 3	B	433	435	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	344	347	anti-parallel
Strand 3	C	42	52	parallel
Strand 4	C	293	305	anti-parallel
Strand 5	C	322	325	anti-parallel
Strand 6	C	331	333	anti-parallel
Strand 7	C	352	353	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	386	first strand
Strand 2	C	389	392	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	401	first strand
Strand 2	C	426	429	anti-parallel
Strand 3	C	433	435	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	344	347	anti-parallel
Strand 3	D	42	52	parallel
Strand 4	D	293	305	anti-parallel
Strand 5	D	322	325	anti-parallel
Strand 6	D	331	333	anti-parallel
Strand 7	D	352	353	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	270	277	anti-parallel
Strand 3	D	282	288	anti-parallel
Strand 4	D	59	64	anti-parallel
Strand 5	E	441	444	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	385	first strand
Strand 2	D	390	392	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	407	first strand
Strand 2	D	399	401	anti-parallel
Strand 3	D	427	429	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	444	first strand
Strand 2	F	57	64	parallel
Strand 3	F	282	289	anti-parallel
Strand 4	F	270	277	anti-parallel
Strand 5	F	231	232	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	322	323	first strand
Strand 2	E	293	305	anti-parallel
Strand 3	E	42	52	anti-parallel
Strand 4	E	344	347	parallel
Strand 5	E	338	340	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	231	232	first strand
Strand 2	E	270	277	anti-parallel
Strand 3	E	282	288	anti-parallel
Strand 4	E	58	64	anti-parallel
Strand 5	F	439	444	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	333	first strand
Strand 2	E	352	353	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	392	first strand
Strand 2	E	417	419	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	400	first strand
Strand 2	E	407	408	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	426	429	first strand
Strand 2	E	432	435	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	322	325	first strand
Strand 2	F	293	305	anti-parallel
Strand 3	F	42	52	anti-parallel
Strand 4	F	345	347	parallel
Strand 5	F	338	340	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	333	first strand
Strand 2	F	352	353	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	383	385	first strand
Strand 2	F	390	392	anti-parallel
Strand 3	F	417	419	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	401	first strand
Strand 2	F	427	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1G5G

Analysis of interatomic Contacts of Structural Units in PDB entry:
1G5G