Analysis of interatomic Contacts of Structural Units in PDB entry:
1G5H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1G5H entry

There are 4 chains in PDB entry 1G5H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 41	HIS 469
B	ARG 40	ALA 460
C	GLU 41	HIS 469
D	ARG 40	HIS 468

There are 73 helices in PDB entry 1G5H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	41	50	Right-handed alpha
Helix 2	2	A	56	60	Right-handed 310
Helix 3	3	A	61	68	Right-handed alpha
Helix 4	4	A	74	93	Right-handed alpha
Helix 5	5	A	123	132	Right-handed alpha
Helix 6	6	A	137	152	Right-handed alpha
Helix 7	7	A	159	166	Right-handed alpha
Helix 8	8	A	166	174	Right-handed alpha
Helix 9	9	A	218	239	Right-handed alpha
Helix 10	10	A	243	245	Right-handed 310
Helix 11	11	A	282	289	Right-handed alpha
Helix 12	12	A	292	296	Right-handed 310
Helix 13	13	A	316	327	Right-handed alpha
Helix 14	14	A	365	383	Right-handed alpha
Helix 15	15	A	391	393	Right-handed 310
Helix 16	16	A	398	409	Right-handed alpha
Helix 17	17	A	418	425	Right-handed alpha
Helix 18	18	A	444	461	Right-handed alpha
Helix 19	19	A	462	464	Right-handed 310
Helix 20	20	B	41	50	Right-handed alpha
Helix 21	21	B	56	60	Right-handed 310
Helix 22	22	B	61	68	Right-handed alpha
Helix 23	23	B	74	93	Right-handed alpha
Helix 24	24	B	123	133	Right-handed alpha
Helix 25	25	B	138	152	Right-handed alpha
Helix 26	26	B	159	174	Right-handed alpha
Helix 27	27	B	218	240	Right-handed alpha
Helix 28	28	B	243	245	Right-handed 310
Helix 29	29	B	282	289	Right-handed alpha
Helix 30	30	B	292	296	Right-handed 310
Helix 31	31	B	316	327	Right-handed alpha
Helix 32	32	B	365	383	Right-handed alpha
Helix 33	33	B	391	393	Right-handed 310
Helix 34	34	B	398	409	Right-handed alpha
Helix 35	35	B	418	425	Right-handed alpha
Helix 36	36	B	444	459	Right-handed alpha
Helix 37	37	C	41	50	Right-handed alpha
Helix 38	38	C	56	60	Right-handed 310
Helix 39	39	C	61	68	Right-handed alpha
Helix 40	40	C	74	93	Right-handed alpha
Helix 41	41	C	123	133	Right-handed alpha
Helix 42	42	C	137	152	Right-handed alpha
Helix 43	43	C	159	166	Right-handed alpha
Helix 44	44	C	166	174	Right-handed alpha
Helix 45	45	C	218	240	Right-handed alpha
Helix 46	46	C	243	245	Right-handed 310
Helix 47	47	C	282	289	Right-handed alpha
Helix 48	48	C	292	296	Right-handed 310
Helix 49	49	C	316	327	Right-handed alpha
Helix 50	50	C	365	383	Right-handed alpha
Helix 51	51	C	391	393	Right-handed 310
Helix 52	52	C	398	409	Right-handed alpha
Helix 53	53	C	418	425	Right-handed alpha
Helix 54	54	C	444	462	Right-handed alpha
Helix 55	55	D	41	50	Right-handed alpha
Helix 56	56	D	56	60	Right-handed 310
Helix 57	57	D	61	68	Right-handed alpha
Helix 58	58	D	74	93	Right-handed alpha
Helix 59	59	D	123	133	Right-handed alpha
Helix 60	60	D	137	152	Right-handed alpha
Helix 61	61	D	159	174	Right-handed alpha
Helix 62	62	D	218	220	Right-handed 310
Helix 63	63	D	221	240	Right-handed alpha
Helix 64	64	D	243	245	Right-handed 310
Helix 65	65	D	282	289	Right-handed alpha
Helix 66	66	D	292	297	Right-handed 310
Helix 67	67	D	316	327	Right-handed alpha
Helix 68	68	D	365	383	Right-handed alpha
Helix 69	69	D	391	393	Right-handed 310
Helix 70	70	D	398	409	Right-handed alpha
Helix 71	71	D	418	425	Right-handed alpha
Helix 72	72	D	444	458	Right-handed alpha
Helix 73	73	D	460	464	Right-handed 310

There are 21 sheets in PDB entry 1G5H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	180	192	parallel
Strand 3	A	204	217	anti-parallel
Strand 4	A	308	315	anti-parallel
Strand 5	A	270	281	anti-parallel
Strand 6	A	259	267	anti-parallel
Strand 7	A	247	253	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	154	155	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	B	120	122	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	303	305	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	345	346	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	389	first strand
Strand 2	A	357	361	parallel
Strand 3	A	413	417	parallel
Strand 4	A	426	431	anti-parallel
Strand 5	A	437	441	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	180	191	parallel
Strand 3	B	205	217	anti-parallel
Strand 4	B	308	315	anti-parallel
Strand 5	B	270	281	anti-parallel
Strand 6	B	259	267	anti-parallel
Strand 7	B	247	253	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	154	155	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	303	305	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	345	346	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	357	361	parallel
Strand 3	B	413	417	parallel
Strand 4	B	426	431	anti-parallel
Strand 5	B	437	441	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	180	192	parallel
Strand 3	C	204	217	anti-parallel
Strand 4	C	308	315	anti-parallel
Strand 5	C	270	281	anti-parallel
Strand 6	C	259	267	anti-parallel
Strand 7	C	247	253	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	153	155	anti-parallel
Strand 3	C	120	122	anti-parallel
Strand 4	D	120	122	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	300	first strand
Strand 2	C	303	305	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	345	346	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	389	first strand
Strand 2	C	357	361	parallel
Strand 3	C	413	417	parallel
Strand 4	C	426	431	anti-parallel
Strand 5	C	437	441	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	180	191	parallel
Strand 3	D	205	217	anti-parallel
Strand 4	D	308	315	anti-parallel
Strand 5	D	270	281	anti-parallel
Strand 6	D	259	267	anti-parallel
Strand 7	D	247	253	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	154	155	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	303	305	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	332	first strand
Strand 2	D	342	346	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	389	first strand
Strand 2	D	357	361	parallel
Strand 3	D	413	417	parallel
Strand 4	D	426	431	anti-parallel
Strand 5	D	437	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1G5H

Analysis of interatomic Contacts of Structural Units in PDB entry:
1G5H