Analysis of interatomic Contacts of Structural Units in PDB entry:
1G61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G61 entry

There are 2 chains in PDB entry 1G61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2003LEU 2227
B
 MET 4003LEU 4227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1G61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2014 2019Right-handed alpha
Helix 2
2
A
2033 2045Right-handed alpha
Helix 3
3
A
2058 2063Right-handed alpha
Helix 4
4
A
2077 2091Right-handed alpha
Helix 5
5
A
2106 2110Right-handed alpha
Helix 6
6
A
2122 2126Right-handed 310
Helix 7
7
A
2127 2136Right-handed alpha
Helix 8
8
A
2168 2180Right-handed alpha
Helix 9
9
A
2195 2198Right-handed 310
Helix 10
10
A
2214 2226Right-handed alpha
Helix 11
11
B
4014 4019Right-handed alpha
Helix 12
12
B
4033 4045Right-handed alpha
Helix 13
13
B
4058 4063Right-handed alpha
Helix 14
14
B
4077 4091Right-handed alpha
Helix 15
15
B
4106 4110Right-handed alpha
Helix 16
16
B
4122 4126Right-handed 310
Helix 17
17
B
4127 4136Right-handed alpha
Helix 18
18
B
4168 4180Right-handed alpha
Helix 19
19
B
4195 4198Right-handed 310
Helix 20
20
B
4214 4226Right-handed alpha
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There are 10 sheets in PDB entry 1G61. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2004 2007first strand
Strand 2
A
2207 2210parallel
Strand 3
A
2200 2202anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2020 2021first strand
Strand 2
A
2025 2028anti-parallel
Strand 3
A
2047 2050parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2064 2065first strand
Strand 2
A
2069 2073anti-parallel
Strand 3
A
2096 2100parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2111 2113first strand
Strand 2
A
2117 2120anti-parallel
Strand 3
A
2138 2141parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2154 2156first strand
Strand 2
A
2160 2163anti-parallel
Strand 3
A
2183 2186parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4004 4007first strand
Strand 2
B
4207 4210parallel
Strand 3
B
4200 4202anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4020 4021first strand
Strand 2
B
4025 4028anti-parallel
Strand 3
B
4047 4050parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4064 4065first strand
Strand 2
B
4069 4073anti-parallel
Strand 3
B
4096 4100parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4111 4113first strand
Strand 2
B
4117 4120anti-parallel
Strand 3
B
4138 4141parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4154 4156first strand
Strand 2
B
4160 4163anti-parallel
Strand 3
B
4183 4186parallel
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