Analysis of interatomic Contacts of Structural Units in PDB entry:
1G6Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1G6Q entry

There are 6 chains in PDB entry 1G6Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ASP 21	HIS 348
2	HIS 29	HIS 348
3	TYR 30	HIS 348
4	GLY 31	HIS 348
5	ASP 28	HIS 348
6	HIS 29	HIS 348

There are 71 helices in PDB entry 1G6Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	1	29	38	Right-handed alpha
Helix 2	2	1	39	54	Right-handed alpha
Helix 3	3	1	53	58	Right-handed alpha
Helix 4	4	1	70	79	Right-handed alpha
Helix 5	5	1	91	103	Right-handed alpha
Helix 6	6	1	143	154	Right-handed alpha
Helix 7	7	1	175	186	Right-handed alpha
Helix 8	8	1	196	202	Right-handed alpha
Helix 9	9	1	211	214	Right-handed 310
Helix 10	10	1	231	236	Right-handed 310
Helix 11	11	1	333	338	Right-handed alpha
Helix 12	12	2	29	39	Right-handed alpha
Helix 13	13	2	39	53	Right-handed alpha
Helix 14	14	2	53	58	Right-handed alpha
Helix 15	15	2	70	79	Right-handed alpha
Helix 16	16	2	91	103	Right-handed alpha
Helix 17	17	2	115	119	Right-handed 310
Helix 18	18	2	143	154	Right-handed alpha
Helix 19	19	2	175	185	Right-handed alpha
Helix 20	20	2	186	188	Right-handed 310
Helix 21	21	2	196	203	Right-handed alpha
Helix 22	22	2	211	214	Right-handed 310
Helix 23	23	2	231	236	Right-handed 310
Helix 24	24	2	333	338	Right-handed alpha
Helix 25	25	3	31	39	Right-handed alpha
Helix 26	26	3	39	53	Right-handed alpha
Helix 27	27	3	53	58	Right-handed alpha
Helix 28	28	3	70	79	Right-handed alpha
Helix 29	29	3	92	103	Right-handed alpha
Helix 30	30	3	143	154	Right-handed alpha
Helix 31	31	3	175	188	Right-handed alpha
Helix 32	32	3	196	202	Right-handed alpha
Helix 33	33	3	211	214	Right-handed 310
Helix 34	34	3	231	236	Right-handed 310
Helix 35	35	4	32	38	Right-handed alpha
Helix 36	36	4	39	53	Right-handed alpha
Helix 37	37	4	53	58	Right-handed alpha
Helix 38	38	4	70	78	Right-handed alpha
Helix 39	39	4	91	103	Right-handed alpha
Helix 40	40	4	115	119	Right-handed 310
Helix 41	41	4	143	154	Right-handed alpha
Helix 42	42	4	175	183	Right-handed alpha
Helix 43	43	4	184	188	Right-handed 310
Helix 44	44	4	196	203	Right-handed alpha
Helix 45	45	4	211	214	Right-handed 310
Helix 46	46	4	231	236	Right-handed 310
Helix 47	47	4	333	338	Right-handed alpha
Helix 48	48	5	29	39	Right-handed alpha
Helix 49	49	5	39	53	Right-handed alpha
Helix 50	50	5	53	58	Right-handed alpha
Helix 51	51	5	70	79	Right-handed alpha
Helix 52	52	5	91	103	Right-handed alpha
Helix 53	53	5	143	154	Right-handed alpha
Helix 54	54	5	175	185	Right-handed alpha
Helix 55	55	5	186	188	Right-handed 310
Helix 56	56	5	196	203	Right-handed alpha
Helix 57	57	5	211	213	Right-handed 310
Helix 58	58	5	231	236	Right-handed 310
Helix 59	59	5	333	337	Right-handed 310
Helix 60	60	6	30	38	Right-handed alpha
Helix 61	61	6	39	54	Right-handed alpha
Helix 62	62	6	53	58	Right-handed alpha
Helix 63	63	6	70	79	Right-handed alpha
Helix 64	64	6	91	103	Right-handed alpha
Helix 65	65	6	115	119	Right-handed 310
Helix 66	66	6	143	154	Right-handed alpha
Helix 67	67	6	175	185	Right-handed alpha
Helix 68	68	6	196	202	Right-handed alpha
Helix 69	69	6	211	214	Right-handed 310
Helix 70	70	6	231	236	Right-handed 310
Helix 71	71	6	333	338	Right-handed alpha

There are 24 sheets in PDB entry 1G6Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	109	113	first strand
Strand 2	1	83	88	parallel
Strand 3	1	61	65	parallel
Strand 4	1	126	131	parallel
Strand 5	1	155	162	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	206	208	first strand
Strand 2	1	286	296	anti-parallel
Strand 3	1	250	261	anti-parallel
Strand 4	1	165	172	anti-parallel
Strand 5	1	220	226	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	206	208	first strand
Strand 2	1	286	296	anti-parallel
Strand 3	1	250	261	anti-parallel
Strand 4	1	272	274	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	237	244	first strand
Strand 2	1	302	312	anti-parallel
Strand 3	1	315	328	anti-parallel
Strand 4	1	339	347	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	109	113	first strand
Strand 2	2	83	88	parallel
Strand 3	2	61	65	parallel
Strand 4	2	126	131	parallel
Strand 5	2	155	162	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	206	208	first strand
Strand 2	2	286	297	anti-parallel
Strand 3	2	249	261	anti-parallel
Strand 4	2	165	173	anti-parallel
Strand 5	2	220	226	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	206	208	first strand
Strand 2	2	286	297	anti-parallel
Strand 3	2	249	261	anti-parallel
Strand 4	2	272	274	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	237	244	first strand
Strand 2	2	302	311	anti-parallel
Strand 3	2	319	328	anti-parallel
Strand 4	2	339	347	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	109	113	first strand
Strand 2	3	83	88	parallel
Strand 3	3	61	65	parallel
Strand 4	3	126	131	parallel
Strand 5	3	155	162	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	206	208	first strand
Strand 2	3	286	297	anti-parallel
Strand 3	3	249	261	anti-parallel
Strand 4	3	165	172	anti-parallel
Strand 5	3	220	226	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	206	208	first strand
Strand 2	3	286	297	anti-parallel
Strand 3	3	249	261	anti-parallel
Strand 4	3	272	274	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	237	244	first strand
Strand 2	3	302	311	anti-parallel
Strand 3	3	319	328	anti-parallel
Strand 4	3	340	347	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	109	113	first strand
Strand 2	4	83	88	parallel
Strand 3	4	61	65	parallel
Strand 4	4	126	130	parallel
Strand 5	4	155	162	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	206	208	first strand
Strand 2	4	286	297	anti-parallel
Strand 3	4	249	261	anti-parallel
Strand 4	4	165	173	anti-parallel
Strand 5	4	220	226	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	206	208	first strand
Strand 2	4	286	297	anti-parallel
Strand 3	4	249	261	anti-parallel
Strand 4	4	272	274	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	238	244	first strand
Strand 2	4	302	311	anti-parallel
Strand 3	4	319	328	anti-parallel
Strand 4	4	339	347	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	109	113	first strand
Strand 2	5	83	88	parallel
Strand 3	5	61	65	parallel
Strand 4	5	126	131	parallel
Strand 5	5	155	162	parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	206	208	first strand
Strand 2	5	286	297	anti-parallel
Strand 3	5	249	261	anti-parallel
Strand 4	5	165	173	anti-parallel
Strand 5	5	215	226	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	206	208	first strand
Strand 2	5	286	297	anti-parallel
Strand 3	5	249	261	anti-parallel
Strand 4	5	272	274	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	237	244	first strand
Strand 2	5	302	311	anti-parallel
Strand 3	5	319	328	anti-parallel
Strand 4	5	339	347	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	109	113	first strand
Strand 2	6	83	88	parallel
Strand 3	6	61	65	parallel
Strand 4	6	126	131	parallel
Strand 5	6	155	162	parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	206	208	first strand
Strand 2	6	286	297	anti-parallel
Strand 3	6	249	261	anti-parallel
Strand 4	6	165	173	anti-parallel
Strand 5	6	220	226	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	206	208	first strand
Strand 2	6	286	297	anti-parallel
Strand 3	6	249	261	anti-parallel
Strand 4	6	272	274	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	238	244	first strand
Strand 2	6	302	311	anti-parallel
Strand 3	6	319	328	anti-parallel
Strand 4	6	339	347	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1G6Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
1G6Q