Analysis of interatomic Contacts of Structural Units in PDB entry:
1G6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G6T entry

There is 1 chain in PDB entry 1G6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1G6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 35Right-handed alpha
Helix 2
2
A
47 60Right-handed alpha
Helix 3
3
A
95 106Right-handed alpha
Helix 4
4
A
118 124Right-handed 310
Helix 5
5
A
126 136Right-handed alpha
Helix 6
6
A
169 180Right-handed alpha
Helix 7
7
A
181 183Right-handed 310
Helix 8
8
A
197 211Right-handed alpha
Helix 9
9
A
242 257Right-handed alpha
Helix 10
10
A
271 274Right-handed 310
Helix 11
11
A
275 284Right-handed alpha
Helix 12
12
A
314 322Right-handed alpha
Helix 13
13
A
323 325Right-handed 310
Helix 14
14
A
334 340Right-handed 310
Helix 15
15
A
343 355Right-handed alpha
Helix 16
16
A
384 393Right-handed alpha
Helix 17
17
A
394 397Right-handed 310
Helix 18
18
A
406 412Right-handed 310
Helix 19
19
A
415 423Right-handed alpha
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There are 7 sheets in PDB entry 1G6T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
401 404anti-parallel
Strand 3
A
378 379parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
424 425anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
259 263parallel
Strand 3
A
293 297anti-parallel
Strand 4
A
286 289anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
236 238parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
113 116parallel
Strand 3
A
151 153anti-parallel
Strand 4
A
140 142anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 166first strand
Strand 2
A
187 195parallel
Strand 3
A
222 225anti-parallel
Strand 4
A
216 218anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
329 332parallel
Strand 3
A
365 369anti-parallel
Strand 4
A
358 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il