Analysis of interatomic Contacts of Structural Units in PDB entry:
1G6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G6V entry

There are 2 chains in PDB entry 1G6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 4PHE 260
K
 GLN 801SER 926
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1G6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
21 25Right-handed 310
Helix 3
3
A
127 129Right-handed 310
Helix 4
4
A
130 135Right-handed alpha
Helix 5
5
A
154 162Right-handed alpha
Helix 6
6
A
163 168Right-handed 310
Helix 7
7
A
180 185Right-handed 310
Helix 8
8
A
222 227Right-handed alpha
Helix 9
9
K
885 889Right-handed 310
Helix 10
10
K
901 906Right-handed alpha
Helix 11
11
K
909 913Right-handed 310
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There are 4 sheets in PDB entry 1G6V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
108 109parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
257 258parallel
Strand 3
A
191 193anti-parallel
Strand 4
A
210 212anti-parallel
Strand 5
A
141 151parallel
Strand 6
A
216 219parallel
Strand 7
A
141 151parallel
Strand 8
A
116 124anti-parallel
Strand 9
A
88 97anti-parallel
Strand 10
A
78 81anti-parallel
Strand 11
A
47 50anti-parallel
Strand 12
A
78 81anti-parallel
Strand 13
A
88 97anti-parallel
Strand 14
A
66 70anti-parallel
Strand 15
A
56 61anti-parallel
Strand 16
A
173 174anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
803 807first strand
Strand 2
K
817 825anti-parallel
Strand 3
K
877 882anti-parallel
Strand 4
K
866 870anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
810 813first strand
Strand 2
K
920 925parallel
Strand 3
K
890 896anti-parallel
Strand 4
K
915 916anti-parallel
Strand 5
K
890 896anti-parallel
Strand 6
K
834 839anti-parallel
Strand 7
K
846 852anti-parallel
Strand 8
K
855 858anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il