Analysis of interatomic Contacts of Structural Units in PDB entry:
1G72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1G72 entry

There are 4 chains in PDB entry 1G72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	LEU 571
B	TYR 1	ASN 57
C	ASP 1	LEU 571
D	TYR 1	ASN 57

There are 35 helices in PDB entry 1G72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1	9	Right-handed alpha
Helix 2	2	A	36	40	Right-handed 310
Helix 3	3	A	95	102	Right-handed 310
Helix 4	4	A	145	149	Right-handed 310
Helix 5	5	A	169	173	Right-handed 310
Helix 6	6	A	197	202	Right-handed alpha
Helix 7	7	A	211	215	Right-handed 310
Helix 8	8	A	218	223	Right-handed alpha
Helix 9	9	A	225	232	Right-handed 310
Helix 10	10	A	260	264	Right-handed 310
Helix 11	11	A	365	368	Right-handed 310
Helix 12	12	A	533	538	Right-handed alpha
Helix 13	13	A	545	547	Right-handed 310
Helix 14	14	A	548	553	Right-handed alpha
Helix 15	15	A	555	559	Right-handed 310
Helix 16	16	B	33	38	Right-handed alpha
Helix 17	17	B	38	57	Right-handed alpha
Helix 18	18	C	1	9	Right-handed alpha
Helix 19	19	C	36	40	Right-handed 310
Helix 20	20	C	95	102	Right-handed 310
Helix 21	21	C	145	149	Right-handed 310
Helix 22	22	C	169	173	Right-handed 310
Helix 23	23	C	197	202	Right-handed alpha
Helix 24	24	C	211	215	Right-handed 310
Helix 25	25	C	218	223	Right-handed alpha
Helix 26	26	C	227	232	Right-handed 310
Helix 27	27	C	260	264	Right-handed 310
Helix 28	28	C	365	368	Right-handed 310
Helix 29	29	C	530	532	Right-handed 310
Helix 30	30	C	533	539	Right-handed alpha
Helix 31	31	C	545	547	Right-handed 310
Helix 32	32	C	548	553	Right-handed alpha
Helix 33	33	C	555	559	Right-handed 310
Helix 34	34	D	33	38	Right-handed alpha
Helix 35	35	D	38	57	Right-handed alpha

There are 20 sheets in PDB entry 1G72. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	471	473	parallel
Strand 3	A	477	481	anti-parallel
Strand 4	A	486	491	anti-parallel
Strand 5	A	497	502	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	565	570	anti-parallel
Strand 3	A	519	526	anti-parallel
Strand 4	A	512	516	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	64	68	anti-parallel
Strand 3	A	75	79	anti-parallel
Strand 4	A	86	90	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	117	121	anti-parallel
Strand 3	A	126	131	anti-parallel
Strand 4	A	137	142	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	177	182	anti-parallel
Strand 4	A	188	193	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	243	first strand
Strand 2	A	248	252	anti-parallel
Strand 3	A	273	278	anti-parallel
Strand 4	A	284	289	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	311	first strand
Strand 2	A	314	322	anti-parallel
Strand 3	A	327	332	anti-parallel
Strand 4	A	338	343	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	354	first strand
Strand 2	A	361	363	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	378	first strand
Strand 2	A	407	413	anti-parallel
Strand 3	A	427	433	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	394	first strand
Strand 2	A	399	405	anti-parallel
Strand 3	A	444	449	anti-parallel
Strand 4	A	456	462	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	471	473	parallel
Strand 3	C	477	481	anti-parallel
Strand 4	C	486	491	anti-parallel
Strand 5	C	497	502	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	47	first strand
Strand 2	C	565	570	anti-parallel
Strand 3	C	519	526	anti-parallel
Strand 4	C	512	516	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	64	68	anti-parallel
Strand 3	C	75	79	anti-parallel
Strand 4	C	86	90	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	117	121	anti-parallel
Strand 3	C	126	131	anti-parallel
Strand 4	C	137	142	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	177	182	anti-parallel
Strand 4	C	188	193	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	243	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	273	278	anti-parallel
Strand 4	C	284	289	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	311	first strand
Strand 2	C	314	322	anti-parallel
Strand 3	C	327	332	anti-parallel
Strand 4	C	338	343	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	354	first strand
Strand 2	C	361	363	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	378	first strand
Strand 2	C	407	413	anti-parallel
Strand 3	C	427	433	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	394	first strand
Strand 2	C	399	405	anti-parallel
Strand 3	C	444	449	anti-parallel
Strand 4	C	456	462	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1G72

Analysis of interatomic Contacts of Structural Units in PDB entry:
1G72