Analysis of interatomic Contacts of Structural Units in PDB entry:
1G88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G88 entry

There are 3 chains in PDB entry 1G88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 285ILE 545
B
 ASN 285PRO 550
C
 ASN 285PRO 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1G88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
373 381Right-handed alpha
Helix 2
2
A
411 418Right-handed alpha
Helix 3
3
A
439 457Right-handed alpha
Helix 4
4
A
491 496Right-handed alpha
Helix 5
5
A
517 521Right-handed 310
Helix 6
6
A
530 540Right-handed alpha
Helix 7
7
B
373 384Right-handed alpha
Helix 8
8
B
411 418Right-handed alpha
Helix 9
9
B
439 466Right-handed alpha
Helix 10
10
B
491 496Right-handed alpha
Helix 11
11
B
517 521Right-handed 310
Helix 12
12
B
530 541Right-handed alpha
Helix 13
13
C
373 382Right-handed alpha
Helix 14
14
C
411 418Right-handed alpha
Helix 15
15
C
439 463Right-handed alpha
Helix 16
16
C
491 498Right-handed alpha
Helix 17
17
C
517 521Right-handed 310
Helix 18
18
C
530 541Right-handed alpha
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There are 9 sheets in PDB entry 1G88. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
426 429parallel
Strand 3
A
407 410anti-parallel
Strand 4
A
500 505anti-parallel
Strand 5
A
524 529anti-parallel
Strand 6
A
322 330anti-parallel
Strand 7
A
333 334anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
426 429parallel
Strand 3
A
407 410anti-parallel
Strand 4
A
500 505anti-parallel
Strand 5
A
524 529anti-parallel
Strand 6
A
322 330anti-parallel
Strand 7
A
339 342anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
347 351parallel
Strand 3
A
387 392anti-parallel
Strand 4
A
396 401anti-parallel
Strand 5
A
434 438anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
426 429parallel
Strand 3
B
407 410anti-parallel
Strand 4
B
500 504anti-parallel
Strand 5
B
524 529anti-parallel
Strand 6
B
322 330anti-parallel
Strand 7
B
333 334anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
426 429parallel
Strand 3
B
407 410anti-parallel
Strand 4
B
500 504anti-parallel
Strand 5
B
524 529anti-parallel
Strand 6
B
322 330anti-parallel
Strand 7
B
339 342anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 363first strand
Strand 2
B
347 351parallel
Strand 3
B
387 392anti-parallel
Strand 4
B
396 401anti-parallel
Strand 5
B
434 438anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 291first strand
Strand 2
C
426 429parallel
Strand 3
C
407 410anti-parallel
Strand 4
C
500 504anti-parallel
Strand 5
C
524 529anti-parallel
Strand 6
C
322 330anti-parallel
Strand 7
C
333 334anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 291first strand
Strand 2
C
426 429parallel
Strand 3
C
407 410anti-parallel
Strand 4
C
500 504anti-parallel
Strand 5
C
524 529anti-parallel
Strand 6
C
322 330anti-parallel
Strand 7
C
339 342anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
361 363first strand
Strand 2
C
347 351parallel
Strand 3
C
387 392anti-parallel
Strand 4
C
396 401anti-parallel
Strand 5
C
434 438anti-parallel
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