Analysis of interatomic Contacts of Structural Units in PDB entry:
1G8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G8J entry

There are 4 chains in PDB entry 1G8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6GLY 825
B
 TYR 6ILE 133
C
 ASP 5GLY 825
D
 ALA 5ILE 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 1G8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 47Right-handed 310
Helix 2
2
A
66 68Right-handed 310
Helix 3
3
A
101 105Right-handed 310
Helix 4
4
A
135 154Right-handed alpha
Helix 5
5
A
155 157Right-handed 310
Helix 6
6
A
172 185Right-handed alpha
Helix 7
7
A
204 210Right-handed alpha
Helix 8
8
A
220 225Right-handed alpha
Helix 9
9
A
234 239Right-handed alpha
Helix 10
10
A
239 246Right-handed alpha
Helix 11
11
A
246 252Right-handed alpha
Helix 12
12
A
255 263Right-handed alpha
Helix 13
13
A
281 292Right-handed alpha
Helix 14
14
A
305 321Right-handed alpha
Helix 15
15
A
324 331Right-handed alpha
Helix 16
16
A
334 342Right-handed alpha
Helix 17
17
A
345 354Right-handed alpha
Helix 18
18
A
356 369Right-handed alpha
Helix 19
19
A
384 389Right-handed alpha
Helix 20
20
A
392 407Right-handed alpha
Helix 21
21
A
439 446Right-handed alpha
Helix 22
22
A
458 463Right-handed alpha
Helix 23
23
A
465 487Right-handed alpha
Helix 24
24
A
491 504Right-handed alpha
Helix 25
25
A
518 523Right-handed 310
Helix 26
26
A
562 581Right-handed alpha
Helix 27
27
A
583 589Right-handed alpha
Helix 28
28
A
597 605Right-handed alpha
Helix 29
29
A
606 609Right-handed 310
Helix 30
30
A
621 628Right-handed 310
Helix 31
31
A
629 637Right-handed alpha
Helix 32
32
A
638 640Right-handed 310
Helix 33
33
A
684 694Right-handed alpha
Helix 34
34
A
712 715Right-handed 310
Helix 35
35
A
716 723Right-handed alpha
Helix 36
36
A
731 739Right-handed alpha
Helix 37
37
A
780 785Right-handed 310
Helix 38
38
A
810 817Right-handed alpha
Helix 39
39
B
15 17Right-handed 310
Helix 40
40
C
44 48Right-handed 310
Helix 41
41
C
66 68Right-handed 310
Helix 42
42
C
101 105Right-handed 310
Helix 43
43
C
105 109Right-handed 310
Helix 44
44
C
135 154Right-handed alpha
Helix 45
45
C
155 157Right-handed 310
Helix 46
46
C
172 185Right-handed alpha
Helix 47
47
C
204 210Right-handed alpha
Helix 48
48
C
220 225Right-handed alpha
Helix 49
49
C
234 239Right-handed alpha
Helix 50
50
C
239 246Right-handed alpha
Helix 51
51
C
246 252Right-handed alpha
Helix 52
52
C
255 263Right-handed alpha
Helix 53
53
C
281 292Right-handed alpha
Helix 54
54
C
305 321Right-handed alpha
Helix 55
55
C
324 331Right-handed alpha
Helix 56
56
C
334 342Right-handed alpha
Helix 57
57
C
345 354Right-handed alpha
Helix 58
58
C
356 369Right-handed alpha
Helix 59
59
C
384 389Right-handed alpha
Helix 60
60
C
392 407Right-handed alpha
Helix 61
61
C
439 447Right-handed alpha
Helix 62
62
C
458 463Right-handed alpha
Helix 63
63
C
465 487Right-handed alpha
Helix 64
64
C
491 503Right-handed alpha
Helix 65
65
C
518 523Right-handed 310
Helix 66
66
C
562 580Right-handed alpha
Helix 67
67
C
583 590Right-handed alpha
Helix 68
68
C
597 605Right-handed alpha
Helix 69
69
C
621 628Right-handed 310
Helix 70
70
C
629 637Right-handed alpha
Helix 71
71
C
638 640Right-handed 310
Helix 72
72
C
684 694Right-handed alpha
Helix 73
73
C
712 715Right-handed 310
Helix 74
74
C
716 723Right-handed alpha
Helix 75
75
C
731 739Right-handed alpha
Helix 76
76
C
780 785Right-handed 310
Helix 77
77
C
810 817Right-handed alpha
Helix 78
78
D
15 17Right-handed 310
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There are 20 sheets in PDB entry 1G8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
80 87anti-parallel
Strand 4
A
70 74anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
124 126anti-parallel
Strand 3
A
526 529anti-parallel
Strand 4
A
509 514parallel
Strand 5
A
451 455parallel
Strand 6
A
159 163parallel
Strand 7
A
192 194parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 299first strand
Strand 2
A
272 276parallel
Strand 3
A
227 231parallel
Strand 4
A
379 383parallel
Strand 5
A
417 419parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
673 674parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
618 619anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
A
546 550anti-parallel
Strand 3
A
641 642anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 649first strand
Strand 2
A
653 655anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 701first strand
Strand 2
A
769 773parallel
Strand 3
A
727 730anti-parallel
Strand 4
A
754 761parallel
Strand 5
A
744 749anti-parallel
Strand 6
A
801 809anti-parallel
Strand 7
A
696 701anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
115 122anti-parallel
Strand 3
B
104 110anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
53 57anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
75 77anti-parallel
Strand 3
B
84 86anti-parallel
Strand 4
B
93 95anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 20first strand
Strand 2
C
29 36anti-parallel
Strand 3
C
80 87anti-parallel
Strand 4
C
70 74anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 133first strand
Strand 2
C
124 127anti-parallel
Strand 3
C
526 529anti-parallel
Strand 4
C
509 514parallel
Strand 5
C
451 455parallel
Strand 6
C
159 163parallel
Strand 7
C
192 194parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
296 299first strand
Strand 2
C
272 276parallel
Strand 3
C
227 231parallel
Strand 4
C
379 383parallel
Strand 5
C
416 419parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
332 333first strand
Strand 2
C
673 674parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
428 429first strand
Strand 2
C
618 619anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
538 541first strand
Strand 2
C
546 550anti-parallel
Strand 3
C
641 642anti-parallel
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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
696 701first strand
Strand 2
C
769 773parallel
Strand 3
C
727 730anti-parallel
Strand 4
C
753 761parallel
Strand 5
C
744 750anti-parallel
Strand 6
C
801 809anti-parallel
Strand 7
C
696 701anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 13first strand
Strand 2
D
115 122anti-parallel
Strand 3
D
104 109anti-parallel
Strand 4
D
53 57anti-parallel
Strand 5
D
33 38anti-parallel
Strand 6
D
23 26anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 70first strand
Strand 2
D
75 77anti-parallel
Strand 3
D
84 86anti-parallel
Strand 4
D
93 95anti-parallel
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