Analysis of interatomic Contacts of Structural Units in PDB entry:
1G8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G8P entry

There is 1 chain in PDB entry 1G8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 18PRO 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1G8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 26Right-handed 310
Helix 2
2
A
29 42Right-handed alpha
Helix 3
3
A
43 46Right-handed 310
Helix 4
4
A
53 57Right-handed 310
Helix 5
5
A
59 69Right-handed alpha
Helix 6
6
A
84 88Right-handed 310
Helix 7
7
A
114 120Right-handed alpha
Helix 8
8
A
123 131Right-handed alpha
Helix 9
9
A
138 144Right-handed alpha
Helix 10
10
A
152 156Right-handed 310
Helix 11
11
A
157 171Right-handed alpha
Helix 12
12
A
202 207Right-handed alpha
Helix 13
13
A
220 237Right-handed alpha
Helix 14
14
A
237 263Right-handed alpha
Helix 15
15
A
264 266Right-handed 310
Helix 16
16
A
269 283Right-handed alpha
Helix 17
17
A
287 305Right-handed alpha
Helix 18
18
A
311 324Right-handed alpha
Helix 19
19
A
325 327Right-handed 310
Helix 20
20
A
341 349Right-handed alpha
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There are 4 sheets in PDB entry 1G8P. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
146 150parallel
Strand 3
A
188 194parallel
Strand 4
A
48 51parallel
Strand 5
A
211 214parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
99 102anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
135 136anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
182 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il