Analysis of interatomic Contacts of Structural Units in PDB entry:
1G8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G8W entry

There are 4 chains in PDB entry 1G8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 233
B
 SER 1SER 233
C
 SER 1SER 233
D
 SER 1SER 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1G8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
102 106Right-handed 310
Helix 3
3
A
194 199Right-handed alpha
Helix 4
4
B
12 14Right-handed 310
Helix 5
5
B
102 106Right-handed 310
Helix 6
6
B
194 199Right-handed alpha
Helix 7
7
C
12 14Right-handed 310
Helix 8
8
C
102 106Right-handed 310
Helix 9
9
C
194 199Right-handed alpha
Helix 10
10
D
12 14Right-handed 310
Helix 11
11
D
102 106Right-handed 310
Helix 12
12
D
194 199Right-handed alpha
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There are 6 sheets in PDB entry 1G8W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 18 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
30 31anti-parallel
Strand 3
A
222 232anti-parallel
Strand 4
A
66 75anti-parallel
Strand 5
A
161 168anti-parallel
Strand 6
A
173 180anti-parallel
Strand 7
A
185 192anti-parallel
Strand 8
A
222 232first strand
Strand 9
A
2 8anti-parallel
Strand 10
B
2 8anti-parallel
Strand 11
B
222 232anti-parallel
Strand 12
B
66 75anti-parallel
Strand 13
B
161 168anti-parallel
Strand 14
B
173 180anti-parallel
Strand 15
B
185 192anti-parallel
Strand 16
B
222 232first strand
Strand 17
B
30 31anti-parallel
Strand 18
B
23 24anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
55 56anti-parallel
Strand 5
A
202 211first strand
Strand 6
A
86 94anti-parallel
Strand 7
A
119 124anti-parallel
Strand 8
A
137 142anti-parallel
Strand 9
A
150 152anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
202 211anti-parallel
Strand 4
B
55 56anti-parallel
Strand 5
B
202 211first strand
Strand 6
B
86 94anti-parallel
Strand 7
B
119 124anti-parallel
Strand 8
B
137 142anti-parallel
Strand 9
B
150 152anti-parallel
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There are 18 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
30 31anti-parallel
Strand 3
C
222 232anti-parallel
Strand 4
C
2 8anti-parallel
Strand 5
D
2 8anti-parallel
Strand 6
D
222 232anti-parallel
Strand 7
D
30 31anti-parallel
Strand 8
D
23 24anti-parallel
Strand 9
C
222 232first strand
Strand 10
C
66 75anti-parallel
Strand 11
C
161 168anti-parallel
Strand 12
C
173 180anti-parallel
Strand 13
C
185 192anti-parallel
Strand 14
D
222 232first strand
Strand 15
D
66 75anti-parallel
Strand 16
D
161 168anti-parallel
Strand 17
D
173 180anti-parallel
Strand 18
D
185 192anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 20first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
202 211anti-parallel
Strand 4
C
55 56anti-parallel
Strand 5
C
202 211first strand
Strand 6
C
86 94anti-parallel
Strand 7
C
119 124anti-parallel
Strand 8
C
137 142anti-parallel
Strand 9
C
150 152anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 20first strand
Strand 2
D
46 51anti-parallel
Strand 3
D
202 211anti-parallel
Strand 4
D
55 56anti-parallel
Strand 5
D
202 211first strand
Strand 6
D
86 94anti-parallel
Strand 7
D
119 124anti-parallel
Strand 8
D
137 142anti-parallel
Strand 9
D
150 152anti-parallel
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