Analysis of interatomic Contacts of Structural Units in PDB entry:
1G8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1G8Y entry

There are 12 chains in PDB entry 1G8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 263
B	ALA 2	ALA 263
C	ALA 2	ALA 263
D	ALA 2	ALA 263
E	ALA 2	ALA 263
F	ALA 2	ALA 263
G	ALA 2	ALA 263
H	ALA 2	ALA 263
I	ALA 2	ALA 263
J	ALA 2	ALA 263
K	ALA 2	ALA 263
L	ALA 2	ALA 263

There are120 helices in PDB entry 1G8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	A	A	8	14	Right-handed alpha
Helix 2	B	A	42	55	Right-handed alpha
Helix 3	C	A	79	92	Right-handed alpha
Helix 4	D	A	95	105	Right-handed alpha
Helix 5	E	A	120	132	Right-handed alpha
Helix 6	1	A	141	145	Right-handed 310
Helix 7	F	A	152	171	Right-handed alpha
Helix 8	G	A	219	223	Right-handed alpha
Helix 9	2	A	229	231	Right-handed 310
Helix 10	3	A	256	258	Right-handed 310
Helix 11	A	B	8	14	Right-handed alpha
Helix 12	B	B	42	55	Right-handed alpha
Helix 13	C	B	79	92	Right-handed alpha
Helix 14	D	B	95	105	Right-handed alpha
Helix 15	E	B	120	132	Right-handed alpha
Helix 16	1	B	141	145	Right-handed 310
Helix 17	F	B	152	171	Right-handed alpha
Helix 18	G	B	219	223	Right-handed alpha
Helix 19	2	B	229	231	Right-handed 310
Helix 20	3	B	256	258	Right-handed 310
Helix 21	A	C	8	14	Right-handed alpha
Helix 22	B	C	42	55	Right-handed alpha
Helix 23	C	C	79	92	Right-handed alpha
Helix 24	D	C	95	105	Right-handed alpha
Helix 25	E	C	120	132	Right-handed alpha
Helix 26	1	C	141	145	Right-handed 310
Helix 27	F	C	152	171	Right-handed alpha
Helix 28	G	C	219	223	Right-handed alpha
Helix 29	2	C	229	231	Right-handed 310
Helix 30	3	C	256	258	Right-handed 310
Helix 31	A	D	8	14	Right-handed alpha
Helix 32	B	D	42	55	Right-handed alpha
Helix 33	C	D	79	92	Right-handed alpha
Helix 34	D	D	95	105	Right-handed alpha
Helix 35	E	D	120	132	Right-handed alpha
Helix 36	1	D	141	145	Right-handed 310
Helix 37	F	D	152	171	Right-handed alpha
Helix 38	G	D	219	223	Right-handed alpha
Helix 39	2	D	229	231	Right-handed 310
Helix 40	3	D	256	258	Right-handed 310
Helix 41	A	E	8	14	Right-handed alpha
Helix 42	B	E	42	55	Right-handed alpha
Helix 43	C	E	79	92	Right-handed alpha
Helix 44	D	E	95	105	Right-handed alpha
Helix 45	E	E	120	132	Right-handed alpha
Helix 46	1	E	141	145	Right-handed 310
Helix 47	F	E	152	171	Right-handed alpha
Helix 48	G	E	219	223	Right-handed alpha
Helix 49	2	E	229	231	Right-handed 310
Helix 50	3	E	256	258	Right-handed 310
Helix 51	A	F	8	14	Right-handed alpha
Helix 52	B	F	42	55	Right-handed alpha
Helix 53	C	F	79	92	Right-handed alpha
Helix 54	D	F	95	105	Right-handed alpha
Helix 55	E	F	120	132	Right-handed alpha
Helix 56	1	F	141	145	Right-handed 310
Helix 57	F	F	152	171	Right-handed alpha
Helix 58	G	F	219	223	Right-handed alpha
Helix 59	2	F	229	231	Right-handed 310
Helix 60	3	F	256	258	Right-handed 310
Helix 61	A	G	8	14	Right-handed alpha
Helix 62	B	G	42	55	Right-handed alpha
Helix 63	C	G	79	92	Right-handed alpha
Helix 64	D	G	95	105	Right-handed alpha
Helix 65	E	G	120	132	Right-handed alpha
Helix 66	1	G	141	145	Right-handed 310
Helix 67	F	G	152	171	Right-handed alpha
Helix 68	G	G	219	223	Right-handed alpha
Helix 69	2	G	229	231	Right-handed 310
Helix 70	3	G	256	258	Right-handed 310
Helix 71	A	H	8	14	Right-handed alpha
Helix 72	B	H	42	55	Right-handed alpha
Helix 73	C	H	79	92	Right-handed alpha
Helix 74	D	H	95	105	Right-handed alpha
Helix 75	E	H	120	132	Right-handed alpha
Helix 76	1	H	141	145	Right-handed 310
Helix 77	F	H	152	171	Right-handed alpha
Helix 78	G	H	219	223	Right-handed alpha
Helix 79	2	H	229	231	Right-handed 310
Helix 80	3	H	256	258	Right-handed 310
Helix 81	A	I	8	14	Right-handed alpha
Helix 82	B	I	42	55	Right-handed alpha
Helix 83	C	I	79	92	Right-handed alpha
Helix 84	D	I	95	105	Right-handed alpha
Helix 85	E	I	120	132	Right-handed alpha
Helix 86	1	I	141	145	Right-handed 310
Helix 87	F	I	152	171	Right-handed alpha
Helix 88	G	I	219	223	Right-handed alpha
Helix 89	2	I	229	231	Right-handed 310
Helix 90	3	I	256	258	Right-handed 310
Helix 91	A	J	8	14	Right-handed alpha
Helix 92	B	J	42	55	Right-handed alpha
Helix 93	C	J	79	92	Right-handed alpha
Helix 94	D	J	95	105	Right-handed alpha
Helix 95	E	J	120	132	Right-handed alpha
Helix 96	1	J	141	145	Right-handed 310
Helix 97	F	J	152	171	Right-handed alpha
Helix 98	G	J	219	223	Right-handed alpha
Helix 99	2	J	229	231	Right-handed 310
Helix 100	3	J	256	258	Right-handed 310
Helix 101	A	K	8	14	Right-handed alpha
Helix 102	B	K	42	55	Right-handed alpha
Helix 103	C	K	79	92	Right-handed alpha
Helix 104	D	K	95	105	Right-handed alpha
Helix 105	E	K	120	132	Right-handed alpha
Helix 106	1	K	141	145	Right-handed 310
Helix 107	F	K	152	171	Right-handed alpha
Helix 108	G	K	219	223	Right-handed alpha
Helix 109	2	K	229	231	Right-handed 310
Helix 110	G	K	256	258	Right-handed 310
Helix 111	A	L	8	14	Right-handed alpha
Helix 112	B	L	42	55	Right-handed alpha
Helix 113	C	L	79	92	Right-handed alpha
Helix 114	D	L	95	105	Right-handed alpha
Helix 115	E	L	120	132	Right-handed alpha
Helix 116	1	L	141	145	Right-handed 310
Helix 117	F	L	152	171	Right-handed alpha
Helix 118	G	L	219	223	Right-handed alpha
Helix 119	2	L	229	231	Right-handed 310
Helix 120	3	L	256	258	Right-handed 310

There are 33 sheets in PDB entry 1G8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	27	28	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	71	75	parallel
Strand 3	A	136	140	parallel
Strand 4	A	173	179	parallel
Strand 5	A	32	37	parallel
Strand 6	A	208	211	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	233	235	anti-parallel
Strand 3	A	251	254	anti-parallel
Strand 4	A	260	261	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	27	28	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	71	75	parallel
Strand 3	B	136	140	parallel
Strand 4	B	173	179	parallel
Strand 5	B	32	37	parallel
Strand 6	B	208	211	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	233	235	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	260	261	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	27	28	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	71	75	parallel
Strand 3	C	136	140	parallel
Strand 4	C	173	179	parallel
Strand 5	C	32	37	parallel
Strand 6	C	208	211	parallel
Strand 7	C	238	240	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	233	235	anti-parallel
Strand 3	C	251	254	anti-parallel
Strand 4	C	260	261	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	27	28	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	108	first strand
Strand 2	D	71	75	parallel
Strand 3	D	136	140	parallel
Strand 4	D	173	179	parallel
Strand 5	D	32	37	parallel
Strand 6	D	208	211	parallel
Strand 7	D	238	240	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	233	235	anti-parallel
Strand 3	D	251	254	anti-parallel
Strand 4	D	260	261	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	24	first strand
Strand 2	E	27	28	anti-parallel

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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	108	first strand
Strand 2	E	71	75	parallel
Strand 3	E	136	140	parallel
Strand 4	E	173	179	parallel
Strand 5	E	32	37	parallel
Strand 6	E	208	214	parallel
Strand 7	E	233	240	anti-parallel
Strand 8	E	250	254	anti-parallel
Strand 9	E	260	261	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	24	first strand
Strand 2	F	27	28	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	108	first strand
Strand 2	F	71	75	parallel
Strand 3	F	136	140	parallel
Strand 4	F	173	179	parallel
Strand 5	F	32	37	parallel
Strand 6	F	208	211	parallel
Strand 7	F	238	240	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	213	214	first strand
Strand 2	F	233	235	anti-parallel
Strand 3	F	251	254	anti-parallel
Strand 4	F	260	261	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	G	27	28	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	108	first strand
Strand 2	G	71	75	parallel
Strand 3	G	136	140	parallel
Strand 4	G	173	180	parallel
Strand 5	G	32	38	parallel
Strand 6	G	208	211	parallel
Strand 7	G	238	240	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	213	214	first strand
Strand 2	G	233	235	anti-parallel
Strand 3	G	251	254	anti-parallel
Strand 4	G	260	261	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	24	first strand
Strand 2	H	27	28	anti-parallel

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There are 9 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	108	first strand
Strand 2	H	71	75	parallel
Strand 3	H	136	140	parallel
Strand 4	H	173	179	parallel
Strand 5	H	32	37	parallel
Strand 6	H	208	214	parallel
Strand 7	H	233	240	anti-parallel
Strand 8	H	250	254	anti-parallel
Strand 9	H	260	261	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	22	24	first strand
Strand 2	I	27	28	anti-parallel

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There are 7 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	106	108	first strand
Strand 2	I	71	75	parallel
Strand 3	I	136	140	parallel
Strand 4	I	173	179	parallel
Strand 5	I	32	37	parallel
Strand 6	I	208	211	parallel
Strand 7	I	238	240	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	213	214	first strand
Strand 2	I	233	235	anti-parallel
Strand 3	I	251	254	anti-parallel
Strand 4	I	260	261	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	22	24	first strand
Strand 2	J	27	28	anti-parallel

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There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	106	108	first strand
Strand 2	J	71	75	parallel
Strand 3	J	136	140	parallel
Strand 4	J	173	180	parallel
Strand 5	J	32	38	parallel
Strand 6	J	208	214	parallel
Strand 7	J	233	240	anti-parallel
Strand 8	J	250	254	anti-parallel
Strand 9	J	260	261	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	24	first strand
Strand 2	K	27	28	anti-parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	106	108	first strand
Strand 2	K	71	75	parallel
Strand 3	K	136	140	parallel
Strand 4	K	173	179	parallel
Strand 5	K	32	37	parallel
Strand 6	K	208	211	parallel
Strand 7	K	238	240	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	213	214	first strand
Strand 2	K	233	235	anti-parallel
Strand 3	K	251	254	anti-parallel
Strand 4	K	260	261	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	22	24	first strand
Strand 2	L	27	28	anti-parallel

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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	106	108	first strand
Strand 2	L	71	75	parallel
Strand 3	L	136	140	parallel
Strand 4	L	173	179	parallel
Strand 5	L	32	37	parallel
Strand 6	L	208	211	parallel
Strand 7	L	238	240	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	213	214	first strand
Strand 2	L	233	235	anti-parallel
Strand 3	L	251	254	anti-parallel
Strand 4	L	260	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1G8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
1G8Y