Analysis of interatomic Contacts of Structural Units in PDB entry:
1G9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1G9T entry

There are 2 chains in PDB entry 1G9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5LEU 180
B
 MET 305ASP 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 1G9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 34Right-handed alpha
Helix 2
2
A
49 60Right-handed alpha
Helix 3
3
A
109 121Right-handed alpha
Helix 4
4
A
136 139Right-handed 310
Helix 5
5
B
314 334Right-handed alpha
Helix 6
6
B
349 360Right-handed alpha
Helix 7
7
B
409 421Right-handed alpha
Helix 8
8
B
436 439Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1G9T. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
174 177anti-parallel
Strand 3
A
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
40 45parallel
Strand 4
A
98 106parallel
Strand 5
A
126 134parallel
Strand 6
A
147 151parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 313first strand
Strand 2
B
474 477anti-parallel
Strand 3
B
457 458anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 388first strand
Strand 2
B
365 371anti-parallel
Strand 3
B
340 345parallel
Strand 4
B
398 406parallel
Strand 5
B
426 434parallel
Strand 6
B
447 451parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il