Analysis of interatomic Contacts of Structural Units in PDB entry:
1GAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GAE entry

There are 2 chains in PDB entry 1GAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 THR 0LYS 330
P
 THR 0LYS 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1GAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
BO
O
10 20Right-handed alpha
Helix 2
CO
O
37 45Right-handed alpha
Helix 3
DO
O
84 87Right-handed alpha
Helix 4
EO
O
102 110Right-handed alpha
Helix 5
1O
O
149 165Right-handed alpha
Helix 6
2O
O
252 264Right-handed alpha
Helix 7
3O
O
315 327Right-handed alpha
Helix 8
BP
P
10 20Right-handed alpha
Helix 9
CP
P
37 45Right-handed alpha
Helix 10
DP
P
84 87Right-handed alpha
Helix 11
EP
P
102 110Right-handed alpha
Helix 12
1P
P
149 165Right-handed alpha
Helix 13
2P
P
252 264Right-handed alpha
Helix 14
3P
P
315 327Right-handed alpha
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There are 4 sheets in PDB entry 1GAE. Click on sheet of interest to get list of strands forming it: BO, CO, BP, CP,

There are 8 strands in BO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
57 60first strand
Strand 2
O
63 66anti-parallel
Strand 3
O
69 74anti-parallel
Strand 4
O
26 31parallel
Strand 5
O
2 6parallel
Strand 6
O
91 94parallel
Strand 7
O
115 118parallel
Strand 8
O
143 145parallel
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There are 7 strands in CO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
204 207first strand
Strand 2
O
225 231anti-parallel
Strand 3
O
167 176parallel
Strand 4
O
238 246anti-parallel
Strand 5
O
304 311anti-parallel
Strand 6
O
290 301anti-parallel
Strand 7
O
271 274parallel
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There are 8 strands in BP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
57 60first strand
Strand 2
P
63 66anti-parallel
Strand 3
P
69 74anti-parallel
Strand 4
P
26 31parallel
Strand 5
P
2 6parallel
Strand 6
P
91 94parallel
Strand 7
P
115 118parallel
Strand 8
P
143 145parallel
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There are 7 strands in CP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
204 207first strand
Strand 2
P
225 231anti-parallel
Strand 3
P
167 176parallel
Strand 4
P
238 246anti-parallel
Strand 5
P
304 311anti-parallel
Strand 6
P
290 301anti-parallel
Strand 7
P
271 274parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il