Analysis of interatomic Contacts of Structural Units in PDB entry:
1GBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GBN entry

There are 3 chains in PDB entry 1GBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 38PHE 439
B
 PRO 38PHE 439
C
 PRO 38PHE 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1GBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 50Right-handed alpha
Helix 2
2
A
83 86Right-handed alpha
Helix 3
3
A
95 106Right-handed alpha
Helix 4
4
A
120 131Right-handed alpha
Helix 5
5
A
142 159Right-handed alpha
Helix 6
6
A
182 187Right-handed alpha
Helix 7
7
A
191 194Right-handed alpha
Helix 8
8
A
212 220Right-handed alpha
Helix 9
9
A
245 255Right-handed alpha
Helix 10
10
A
277 281Right-handed 310
Helix 11
11
A
292 295Right-handed 310
Helix 12
12
A
308 313Right-handed alpha
Helix 13
13
A
327 342Right-handed alpha
Helix 14
14
A
345 362Right-handed alpha
Helix 15
15
A
390 399Right-handed alpha
Helix 16
16
A
422 436Right-handed alpha
Helix 17
17
B
40 50Right-handed alpha
Helix 18
18
B
83 86Right-handed alpha
Helix 19
19
B
95 106Right-handed alpha
Helix 20
20
B
120 131Right-handed alpha
Helix 21
21
B
142 159Right-handed alpha
Helix 22
22
B
182 187Right-handed alpha
Helix 23
23
B
191 194Right-handed alpha
Helix 24
24
B
212 220Right-handed alpha
Helix 25
25
B
245 255Right-handed alpha
Helix 26
26
B
277 281Right-handed 310
Helix 27
27
B
292 295Right-handed 310
Helix 28
28
B
308 313Right-handed alpha
Helix 29
29
B
327 342Right-handed alpha
Helix 30
30
B
345 362Right-handed alpha
Helix 31
31
B
390 399Right-handed alpha
Helix 32
32
B
422 436Right-handed alpha
Helix 33
33
C
40 50Right-handed alpha
Helix 34
34
C
83 86Right-handed alpha
Helix 35
35
C
95 106Right-handed alpha
Helix 36
36
C
120 131Right-handed alpha
Helix 37
37
C
142 159Right-handed alpha
Helix 38
38
C
182 187Right-handed alpha
Helix 39
39
C
191 194Right-handed alpha
Helix 40
40
C
212 220Right-handed alpha
Helix 41
41
C
245 255Right-handed alpha
Helix 42
42
C
277 281Right-handed 310
Helix 43
43
C
292 295Right-handed 310
Helix 44
44
C
308 313Right-handed alpha
Helix 45
45
C
327 342Right-handed alpha
Helix 46
46
C
345 362Right-handed alpha
Helix 47
47
C
390 399Right-handed alpha
Helix 48
48
C
422 436Right-handed alpha
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There are 9 sheets in PDB entry 1GBN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
69 72anti-parallel
Strand 3
A
62 66anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
302 306anti-parallel
Strand 3
A
287 290anti-parallel
Strand 4
A
259 263parallel
Strand 5
A
224 230parallel
Strand 6
A
169 173parallel
Strand 7
A
204 207parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
368 374anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
69 72anti-parallel
Strand 3
B
62 66anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
302 306anti-parallel
Strand 3
B
287 290anti-parallel
Strand 4
B
259 263parallel
Strand 5
B
224 230parallel
Strand 6
B
169 173parallel
Strand 7
B
204 207parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 414first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
368 374anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 79first strand
Strand 2
C
69 72anti-parallel
Strand 3
C
62 66anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 139first strand
Strand 2
C
302 306anti-parallel
Strand 3
C
287 290anti-parallel
Strand 4
C
259 263parallel
Strand 5
C
224 229parallel
Strand 6
C
169 173parallel
Strand 7
C
204 207parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
411 414first strand
Strand 2
C
377 382anti-parallel
Strand 3
C
368 374anti-parallel
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