Analysis of interatomic Contacts of Structural Units in PDB entry:
1GC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GC5 entry

There is 1 chain in PDB entry 1GC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1GC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 27Right-handed alpha
Helix 2
2
A
28 30Right-handed 310
Helix 3
3
A
48 60Right-handed alpha
Helix 4
4
A
60 70Right-handed alpha
Helix 5
5
A
77 91Right-handed alpha
Helix 6
6
A
101 112Right-handed alpha
Helix 7
7
A
120 132Right-handed alpha
Helix 8
8
A
145 150Right-handed alpha
Helix 9
9
A
171 175Right-handed 310
Helix 10
10
A
220 226Right-handed alpha
Helix 11
11
A
226 232Right-handed alpha
Helix 12
12
A
241 245Right-handed 310
Helix 13
13
A
254 272Right-handed alpha
Helix 14
14
A
285 296Right-handed alpha
Helix 15
15
A
297 299Right-handed 310
Helix 16
16
A
305 316Right-handed alpha
Helix 17
17
A
318 327Right-handed alpha
Helix 18
18
A
329 345Right-handed alpha
Helix 19
19
A
366 386Right-handed alpha
Helix 20
20
A
392 400Right-handed 310
Helix 21
21
A
403 417Right-handed alpha
Helix 22
22
A
448 466Right-handed alpha
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There are 3 sheets in PDB entry 1GC5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
137 139parallel
Strand 4
A
33 36parallel
Strand 5
A
236 239parallel
Strand 6
A
275 279parallel
Strand 7
A
301 304parallel
Strand 8
A
348 353parallel
Strand 9
A
356 361anti-parallel
Strand 10
A
431 436anti-parallel
Strand 11
A
424 426anti-parallel
Strand 12
A
418 421anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
204 209parallel
Strand 3
A
183 189anti-parallel
Strand 4
A
40 46parallel
Strand 5
A
115 119anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
198 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il