Analysis of interatomic Contacts of Structural Units in PDB entry:
1GC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GC8 entry

There are 2 chains in PDB entry 1GC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1001ALA 1345
B
 MET 1ALA 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 1GC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1011 1031Right-handed alpha
Helix 2
2
A
1042 1050Right-handed alpha
Helix 3
3
A
1054 1064Right-handed alpha
Helix 4
4
A
1074 1079Right-handed alpha
Helix 5
5
A
1081 1084Right-handed 310
Helix 6
6
A
1085 1097Right-handed alpha
Helix 7
7
A
1111 1116Right-handed 310
Helix 8
8
A
1119 1124Right-handed alpha
Helix 9
9
A
1159 1176Right-handed alpha
Helix 10
10
A
1189 1203Right-handed alpha
Helix 11
11
A
1204 1206Right-handed 310
Helix 12
12
A
1216 1226Right-handed alpha
Helix 13
13
A
1227 1230Right-handed 310
Helix 14
14
A
1236 1248Right-handed alpha
Helix 15
15
A
1253 1256Right-handed 310
Helix 16
16
A
1276 1280Right-handed 310
Helix 17
17
A
1287 1301Right-handed alpha
Helix 18
18
A
1304 1322Right-handed alpha
Helix 19
19
A
1324 1328Right-handed 310
Helix 20
20
A
1332 1343Right-handed alpha
Helix 21
21
B
11 31Right-handed alpha
Helix 22
22
B
42 50Right-handed alpha
Helix 23
23
B
54 64Right-handed alpha
Helix 24
24
B
74 79Right-handed 310
Helix 25
25
B
81 84Right-handed 310
Helix 26
26
B
85 98Right-handed alpha
Helix 27
27
B
112 116Right-handed 310
Helix 28
28
B
119 124Right-handed alpha
Helix 29
29
B
159 176Right-handed alpha
Helix 30
30
B
189 204Right-handed alpha
Helix 31
31
B
216 226Right-handed alpha
Helix 32
32
B
227 230Right-handed 310
Helix 33
33
B
236 249Right-handed alpha
Helix 34
34
B
287 301Right-handed alpha
Helix 35
35
B
304 322Right-handed alpha
Helix 36
36
B
324 328Right-handed 310
Helix 37
37
B
332 342Right-handed alpha
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There are 3 sheets in PDB entry 1GC8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1035 1038first strand
Strand 2
A
1002 1008parallel
Strand 3
A
1066 1071parallel
Strand 4
A
1268 1271parallel
Strand 5
A
1258 1263anti-parallel
Strand 6
A
1099 1107anti-parallel
Strand 7
A
1127 1133anti-parallel
Strand 8
A
1232 1235parallel
Strand 9
A
1179 1184parallel
Strand 10
A
1210 1215parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1146first strand
Strand 2
A
1150 1158anti-parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
145 146anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
2 8parallel
Strand 3
B
66 71parallel
Strand 4
B
268 269parallel
Strand 5
B
260 263anti-parallel
Strand 6
B
99 107anti-parallel
Strand 7
B
127 133anti-parallel
Strand 8
B
232 235parallel
Strand 9
B
179 184parallel
Strand 10
B
210 215parallel
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