Analysis of interatomic Contacts of Structural Units in PDB entry:
1GDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GDE entry

There are 2 chains in PDB entry 1GDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 389
B
 ALA 502VAL 889
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1GDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 10Right-handed alpha
Helix 2
2
A
13 25Right-handed alpha
Helix 3
3
A
41 54Right-handed alpha
Helix 4
4
A
65 81Right-handed alpha
Helix 5
5
A
95 97Right-handed 310
Helix 6
6
A
98 105Right-handed alpha
Helix 7
7
A
123 132Right-handed alpha
Helix 8
8
A
141 145Right-handed 310
Helix 9
9
A
149 157Right-handed alpha
Helix 10
10
A
178 192Right-handed alpha
Helix 11
11
A
214 218Right-handed 310
Helix 12
12
A
221 223Right-handed 310
Helix 13
13
A
237 241Right-handed 310
Helix 14
14
A
248 261Right-handed alpha
Helix 15
15
A
267 279Right-handed alpha
Helix 16
16
A
280 308Right-handed alpha
Helix 17
17
A
325 329Right-handed 310
Helix 18
18
A
331 342Right-handed alpha
Helix 19
19
A
351 358Right-handed 310
Helix 20
20
A
368 386Right-handed alpha
Helix 21
21
B
502 510Right-handed alpha
Helix 22
22
B
513 524Right-handed alpha
Helix 23
23
B
541 554Right-handed alpha
Helix 24
24
B
565 581Right-handed alpha
Helix 25
25
B
595 597Right-handed 310
Helix 26
26
B
598 605Right-handed alpha
Helix 27
27
B
623 632Right-handed alpha
Helix 28
28
B
641 645Right-handed 310
Helix 29
29
B
649 657Right-handed alpha
Helix 30
30
B
678 692Right-handed alpha
Helix 31
31
B
714 718Right-handed 310
Helix 32
32
B
721 723Right-handed 310
Helix 33
33
B
737 741Right-handed 310
Helix 34
34
B
748 761Right-handed alpha
Helix 35
35
B
767 779Right-handed alpha
Helix 36
36
B
780 808Right-handed alpha
Helix 37
37
B
825 829Right-handed 310
Helix 38
38
B
831 842Right-handed alpha
Helix 39
39
B
851 858Right-handed 310
Helix 40
40
B
868 886Right-handed alpha
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There are 6 sheets in PDB entry 1GDE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
345 346parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
243 246anti-parallel
Strand 3
A
225 230anti-parallel
Strand 4
A
195 199parallel
Strand 5
A
161 167parallel
Strand 6
A
113 118parallel
Strand 7
A
134 139parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
361 364anti-parallel
Strand 3
A
348 349anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 530first strand
Strand 2
B
845 846parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 593first strand
Strand 2
B
743 746anti-parallel
Strand 3
B
725 730anti-parallel
Strand 4
B
695 699parallel
Strand 5
B
661 667parallel
Strand 6
B
613 618parallel
Strand 7
B
634 639parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
820 821first strand
Strand 2
B
861 864anti-parallel
Strand 3
B
848 849anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il