Analysis of interatomic Contacts of Structural Units in PDB entry:
1GDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GDH entry

There are 2 chains in PDB entry 1GDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ALA 321
B
 LYS 2ALA 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1GDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
13 22Right-handed alpha
Helix 2
A2
A
36 43Right-handed alpha
Helix 3
A3
A
59 64Right-handed alpha
Helix 4
A4
A
84 89Right-handed alpha
Helix 5
AA
A
102 117Right-handed alpha
Helix 6
A5
A
120 128Right-handed alpha
Helix 7
AB
A
157 168Right-handed alpha
Helix 8
AC
A
183 188Right-handed alpha
Helix 9
A6
A
197 202Right-handed alpha
Helix 10
AE
A
223 226Right-handed alpha
Helix 11
AF
A
246 255Right-handed alpha
Helix 12
A7
A
293 312Right-handed alpha
Helix 13
B1
B
13 22Right-handed alpha
Helix 14
B2
B
36 43Right-handed alpha
Helix 15
B3
B
59 64Right-handed alpha
Helix 16
B4
B
84 89Right-handed alpha
Helix 17
BA
B
102 117Right-handed alpha
Helix 18
B5
B
120 128Right-handed alpha
Helix 19
BB
B
157 168Right-handed alpha
Helix 20
BC
B
183 188Right-handed alpha
Helix 21
B6
B
197 202Right-handed alpha
Helix 22
BE
B
223 226Right-handed alpha
Helix 23
BF
B
246 255Right-handed alpha
Helix 24
B7
B
293 312Right-handed alpha
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There are 4 sheets in PDB entry 1GDH. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
4 7parallel
Strand 3
A
48 52parallel
Strand 4
A
71 75parallel
Strand 5
A
93 96parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
172 176parallel
Strand 3
A
149 153parallel
Strand 4
A
206 209parallel
Strand 5
A
233 237parallel
Strand 6
A
258 263parallel
Strand 7
A
282 284parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
4 7parallel
Strand 3
B
48 52parallel
Strand 4
B
71 75parallel
Strand 5
B
93 96parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
172 176parallel
Strand 3
B
149 153parallel
Strand 4
B
206 209parallel
Strand 5
B
233 237parallel
Strand 6
B
258 263parallel
Strand 7
B
282 284parallel
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