Analysis of interatomic Contacts of Structural Units in PDB entry:
1GEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GEF entry

There are 4 chains in PDB entry 1GEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 120
B
 MET 1GLN 116
D
 MET 1GLN 116
E
 MET 1GLY 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1GEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
27 30Right-handed 310
Helix 3
3
A
58 73Right-handed alpha
Helix 4
4
A
102 106Right-handed 310
Helix 5
5
A
108 113Right-handed alpha
Helix 6
6
A
114 118Right-handed 310
Helix 7
7
B
2 19Right-handed alpha
Helix 8
8
B
58 73Right-handed alpha
Helix 9
9
B
108 113Right-handed alpha
Helix 10
10
D
2 19Right-handed alpha
Helix 11
11
D
27 30Right-handed 310
Helix 12
12
D
58 73Right-handed alpha
Helix 13
13
D
108 114Right-handed alpha
Helix 14
14
E
2 19Right-handed alpha
Helix 15
15
E
58 73Right-handed alpha
Helix 16
16
E
108 113Right-handed alpha
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There are 8 sheets in PDB entry 1GEF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
42 50anti-parallel
Strand 4
A
75 82parallel
Strand 5
A
86 91anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
99 101anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
42 50anti-parallel
Strand 4
B
75 82parallel
Strand 5
B
86 91anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
99 101anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
34 37anti-parallel
Strand 3
D
42 49anti-parallel
Strand 4
D
75 81parallel
Strand 5
D
88 91anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 56first strand
Strand 2
D
100 101anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 25first strand
Strand 2
E
34 37anti-parallel
Strand 3
E
42 50anti-parallel
Strand 4
E
75 82parallel
Strand 5
E
86 91anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 57first strand
Strand 2
E
99 101anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il