Analysis of interatomic Contacts of Structural Units in PDB entry:
1GER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GER entry

There are 2 chains in PDB entry 1GER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ARG 450
B	THR 2	ARG 450

There are 24 helices in PDB entry 1GER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	H1	A	14	25	Right-handed alpha
Helix 2	H2	A	40	64	Right-handed alpha
Helix 3	H3	A	81	105	Right-handed alpha
Helix 4	H4	A	157	161	Right-handed alpha
Helix 5	H5	A	177	188	Right-handed alpha
Helix 6	H6	A	208	221	Right-handed alpha
Helix 7	H7	A	272	275	Right-handed alpha
Helix 8	H8	A	311	326	Right-handed alpha
Helix 9	H9	A	356	363	Right-handed alpha
Helix 10	H10	A	378	381	Right-handed alpha
Helix 11	H11	A	412	424	Right-handed alpha
Helix 12	H12	A	429	433	Right-handed alpha
Helix 13	H13	B	14	25	Right-handed alpha
Helix 14	H14	B	40	64	Right-handed alpha
Helix 15	H15	B	81	105	Right-handed alpha
Helix 16	H16	B	157	161	Right-handed alpha
Helix 17	H17	B	177	188	Right-handed alpha
Helix 18	H18	B	208	221	Right-handed alpha
Helix 19	H19	B	272	275	Right-handed alpha
Helix 20	H20	B	311	326	Right-handed alpha
Helix 21	H21	B	356	363	Right-handed alpha
Helix 22	H22	B	378	381	Right-handed alpha
Helix 23	H23	B	412	424	Right-handed alpha
Helix 24	H24	B	429	433	Right-handed alpha

There are 13 sheets in PDB entry 1GER. Click on sheet of interest to get list of strands forming it: SAA, SAB, SAC, SAD, SAE, SAF, SAG, SBA, SBB, SBC, SBD, SBE, SBF,

There are 5 strands in SAA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	134	138	parallel
Strand 3	A	6	11	parallel
Strand 4	A	29	34	parallel
Strand 5	A	109	113	parallel

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There are 4 strands in SAB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	128	131	parallel
Strand 3	A	122	125	anti-parallel
Strand 4	A	116	119	anti-parallel

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There are 4 strands in SAC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	192	197	parallel
Strand 3	A	168	173	parallel
Strand 4	A	255	260	parallel

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There are 3 strands in SAD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	237	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	250	254	anti-parallel

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There are 5 strands in SAE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	375	first strand
Strand 2	A	389	396	anti-parallel
Strand 3	A	401	409	anti-parallel
Strand 4	A	348	354	anti-parallel
Strand 5	A	341	343	anti-parallel

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There are 2 strands in SAF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	144	first strand
Strand 2	A	262	266	anti-parallel

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There are 2 strands in SAG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	80	first strand
Strand 2	B	71	80	anti-parallel

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There are 5 strands in SBA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	134	138	parallel
Strand 3	B	6	11	parallel
Strand 4	B	29	34	parallel
Strand 5	B	109	113	parallel

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There are 4 strands in SBB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	128	131	parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	116	119	anti-parallel

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There are 4 strands in SBC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	192	197	parallel
Strand 3	B	168	173	parallel
Strand 4	B	255	260	parallel

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There are 3 strands in SBD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	237	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	250	254	anti-parallel

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There are 5 strands in SBE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	375	first strand
Strand 2	B	389	396	anti-parallel
Strand 3	B	401	409	anti-parallel
Strand 4	B	348	354	anti-parallel
Strand 5	B	341	343	anti-parallel

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There are 2 strands in SBF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	144	first strand
Strand 2	B	262	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GER

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GER