Analysis of interatomic Contacts of Structural Units in PDB entry:
1GG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GG3 entry

There are 3 chains in PDB entry 1GG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 279
B
 MET 1ARG 279
C
 MET 1ARG 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1GG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 35Right-handed alpha
Helix 2
2
A
61 66Right-handed alpha
Helix 3
3
A
83 87Right-handed 310
Helix 4
4
A
89 106Right-handed alpha
Helix 5
5
A
112 129Right-handed alpha
Helix 6
6
A
140 144Right-handed 310
Helix 7
7
A
151 165Right-handed alpha
Helix 8
8
A
169 184Right-handed alpha
Helix 9
9
A
226 228Right-handed 310
Helix 10
10
A
260 278Right-handed alpha
Helix 11
11
B
23 35Right-handed alpha
Helix 12
12
B
61 66Right-handed alpha
Helix 13
13
B
83 87Right-handed 310
Helix 14
14
B
89 106Right-handed alpha
Helix 15
15
B
114 129Right-handed alpha
Helix 16
16
B
136 140Right-handed 310
Helix 17
17
B
151 165Right-handed alpha
Helix 18
18
B
169 183Right-handed alpha
Helix 19
19
B
224 226Right-handed 310
Helix 20
20
B
260 278Right-handed alpha
Helix 21
21
C
24 36Right-handed alpha
Helix 22
22
C
62 67Right-handed 310
Helix 23
23
C
83 87Right-handed 310
Helix 24
24
C
89 107Right-handed alpha
Helix 25
25
C
114 129Right-handed alpha
Helix 26
26
C
139 144Right-handed 310
Helix 27
27
C
151 164Right-handed alpha
Helix 28
28
C
169 183Right-handed alpha
Helix 29
29
C
260 278Right-handed alpha
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There are 8 sheets in PDB entry 1GG3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
72 76parallel
Strand 4
A
45 47anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
203 206anti-parallel
Strand 3
A
210 214anti-parallel
Strand 4
A
221 224anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 234first strand
Strand 2
A
237 241anti-parallel
Strand 3
A
253 257anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
72 76parallel
Strand 4
B
45 47anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 223first strand
Strand 2
B
210 214anti-parallel
Strand 3
B
201 207anti-parallel
Strand 4
B
190 196anti-parallel
Strand 5
B
252 257anti-parallel
Strand 6
B
237 242anti-parallel
Strand 7
B
228 234anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
72 76parallel
Strand 4
C
45 48anti-parallel
Strand 5
C
54 55anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
203 206anti-parallel
Strand 3
C
210 214anti-parallel
Strand 4
C
222 224anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 234first strand
Strand 2
C
237 241anti-parallel
Strand 3
C
253 257anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il