Analysis of interatomic Contacts of Structural Units in PDB entry:
1GG9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GG9 entry

There are 4 chains in PDB entry 1GG9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 27	ALA 753
B	ASP 27	ALA 753
C	ASP 27	ALA 753
D	ASP 27	ALA 753

There are128 helices in PDB entry 1GG9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	52	57	Right-handed alpha
Helix 2	2	A	62	68	Right-handed alpha
Helix 3	3	A	107	119	Right-handed alpha
Helix 4	4	A	150	154	Right-handed 310
Helix 5	5	A	210	212	Right-handed 310
Helix 6	6	A	213	222	Right-handed alpha
Helix 7	7	A	236	246	Right-handed alpha
Helix 8	8	A	249	258	Right-handed alpha
Helix 9	9	A	259	262	Right-handed 310
Helix 10	10	A	265	269	Right-handed 310
Helix 11	11	A	303	314	Right-handed alpha
Helix 12	12	A	316	329	Right-handed alpha
Helix 13	13	A	344	346	Right-handed 310
Helix 14	14	A	381	386	Right-handed alpha
Helix 15	15	A	405	423	Right-handed alpha
Helix 16	16	A	427	431	Right-handed 310
Helix 17	17	A	431	435	Right-handed 310
Helix 18	18	A	498	502	Right-handed 310
Helix 19	19	A	505	515	Right-handed alpha
Helix 20	20	A	516	533	Right-handed alpha
Helix 21	21	A	536	549	Right-handed alpha
Helix 22	22	A	551	562	Right-handed alpha
Helix 23	23	A	567	572	Right-handed alpha
Helix 24	24	A	585	589	Right-handed 310
Helix 25	25	A	612	626	Right-handed alpha
Helix 26	26	A	658	662	Right-handed 310
Helix 27	27	A	672	677	Right-handed alpha
Helix 28	28	A	678	691	Right-handed alpha
Helix 29	29	A	700	707	Right-handed 310
Helix 30	30	A	725	738	Right-handed alpha
Helix 31	31	A	741	743	Right-handed 310
Helix 32	32	A	744	749	Right-handed alpha
Helix 33	33	B	52	57	Right-handed alpha
Helix 34	34	B	62	68	Right-handed alpha
Helix 35	35	B	107	119	Right-handed alpha
Helix 36	36	B	150	154	Right-handed 310
Helix 37	37	B	210	212	Right-handed 310
Helix 38	38	B	213	222	Right-handed alpha
Helix 39	39	B	236	246	Right-handed alpha
Helix 40	40	B	249	258	Right-handed alpha
Helix 41	41	B	259	262	Right-handed 310
Helix 42	42	B	265	269	Right-handed 310
Helix 43	43	B	303	314	Right-handed alpha
Helix 44	44	B	316	329	Right-handed alpha
Helix 45	45	B	344	346	Right-handed 310
Helix 46	46	B	381	386	Right-handed alpha
Helix 47	47	B	405	423	Right-handed alpha
Helix 48	48	B	427	431	Right-handed 310
Helix 49	49	B	431	435	Right-handed 310
Helix 50	50	B	498	502	Right-handed 310
Helix 51	51	B	505	515	Right-handed alpha
Helix 52	52	B	516	533	Right-handed alpha
Helix 53	53	B	536	549	Right-handed alpha
Helix 54	54	B	551	562	Right-handed alpha
Helix 55	55	B	567	572	Right-handed alpha
Helix 56	56	B	585	589	Right-handed 310
Helix 57	57	B	612	626	Right-handed alpha
Helix 58	58	B	658	662	Right-handed 310
Helix 59	59	B	671	677	Right-handed alpha
Helix 60	60	B	678	691	Right-handed alpha
Helix 61	61	B	700	707	Right-handed 310
Helix 62	62	B	725	738	Right-handed alpha
Helix 63	63	B	741	743	Right-handed 310
Helix 64	64	B	744	749	Right-handed alpha
Helix 65	65	C	52	57	Right-handed alpha
Helix 66	66	C	62	68	Right-handed alpha
Helix 67	67	C	107	119	Right-handed alpha
Helix 68	68	C	150	154	Right-handed 310
Helix 69	69	C	210	212	Right-handed 310
Helix 70	70	C	213	222	Right-handed alpha
Helix 71	71	C	236	246	Right-handed alpha
Helix 72	72	C	249	258	Right-handed alpha
Helix 73	73	C	259	262	Right-handed 310
Helix 74	74	C	265	269	Right-handed 310
Helix 75	75	C	303	314	Right-handed alpha
Helix 76	76	C	316	329	Right-handed alpha
Helix 77	77	C	344	346	Right-handed 310
Helix 78	78	C	381	386	Right-handed alpha
Helix 79	79	C	405	423	Right-handed alpha
Helix 80	80	C	427	431	Right-handed 310
Helix 81	81	C	431	435	Right-handed 310
Helix 82	82	C	498	502	Right-handed 310
Helix 83	83	C	505	514	Right-handed alpha
Helix 84	84	C	516	533	Right-handed alpha
Helix 85	85	C	536	548	Right-handed alpha
Helix 86	86	C	551	562	Right-handed alpha
Helix 87	87	C	567	572	Right-handed alpha
Helix 88	88	C	585	589	Right-handed 310
Helix 89	89	C	612	626	Right-handed alpha
Helix 90	90	C	658	662	Right-handed 310
Helix 91	91	C	672	677	Right-handed alpha
Helix 92	92	C	678	691	Right-handed alpha
Helix 93	93	C	700	707	Right-handed 310
Helix 94	94	C	727	738	Right-handed alpha
Helix 95	95	C	741	743	Right-handed 310
Helix 96	96	C	744	749	Right-handed alpha
Helix 97	97	D	52	57	Right-handed alpha
Helix 98	98	D	62	68	Right-handed alpha
Helix 99	99	D	107	119	Right-handed alpha
Helix 100	100	D	150	154	Right-handed 310
Helix 101	101	D	210	212	Right-handed 310
Helix 102	102	D	213	222	Right-handed alpha
Helix 103	103	D	236	246	Right-handed alpha
Helix 104	104	D	249	258	Right-handed alpha
Helix 105	105	D	259	262	Right-handed 310
Helix 106	106	D	265	269	Right-handed 310
Helix 107	107	D	303	314	Right-handed alpha
Helix 108	108	D	316	329	Right-handed alpha
Helix 109	109	D	344	346	Right-handed 310
Helix 110	110	D	381	386	Right-handed alpha
Helix 111	111	D	405	423	Right-handed alpha
Helix 112	112	D	427	431	Right-handed 310
Helix 113	113	D	431	435	Right-handed 310
Helix 114	114	D	498	502	Right-handed 310
Helix 115	115	D	505	515	Right-handed alpha
Helix 116	116	D	516	533	Right-handed alpha
Helix 117	117	D	536	549	Right-handed alpha
Helix 118	118	D	551	562	Right-handed alpha
Helix 119	119	D	567	572	Right-handed alpha
Helix 120	120	D	585	589	Right-handed 310
Helix 121	121	D	612	626	Right-handed alpha
Helix 122	122	D	658	662	Right-handed 310
Helix 123	123	D	672	677	Right-handed alpha
Helix 124	124	D	678	691	Right-handed alpha
Helix 125	125	D	700	707	Right-handed 310
Helix 126	126	D	727	738	Right-handed alpha
Helix 127	127	D	741	743	Right-handed 310
Helix 128	128	D	744	749	Right-handed alpha

There are 18 sheets in PDB entry 1GG9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	C	453	454	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	C	488	494	anti-parallel
Strand 4	B	96	97	anti-parallel

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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	401	first strand
Strand 2	A	277	280	anti-parallel
Strand 3	A	286	295	anti-parallel
Strand 4	A	333	342	anti-parallel
Strand 5	A	367	377	anti-parallel
Strand 6	A	131	140	anti-parallel
Strand 7	A	160	167	anti-parallel
Strand 8	A	184	191	anti-parallel
Strand 9	A	194	201	anti-parallel
Strand 10	A	271	272	anti-parallel
Strand 11	A	286	295	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	C	72	73	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	A	488	495	anti-parallel
Strand 3	B	488	495	anti-parallel
Strand 4	C	95	97	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	653	first strand
Strand 2	A	629	634	parallel
Strand 3	A	602	606	parallel
Strand 4	A	664	667	parallel
Strand 5	A	695	698	parallel
Strand 6	A	718	721	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	641	first strand
Strand 2	A	647	649	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	D	453	454	parallel

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There are 11 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	277	280	anti-parallel
Strand 3	B	286	295	anti-parallel
Strand 4	B	333	342	anti-parallel
Strand 5	B	367	377	anti-parallel
Strand 6	B	131	140	anti-parallel
Strand 7	B	160	167	anti-parallel
Strand 8	B	184	191	anti-parallel
Strand 9	B	194	201	anti-parallel
Strand 10	B	271	272	anti-parallel
Strand 11	B	286	295	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	D	72	73	parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	653	first strand
Strand 2	B	629	634	parallel
Strand 3	B	602	606	parallel
Strand 4	B	664	667	parallel
Strand 5	B	695	698	parallel
Strand 6	B	718	721	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	641	first strand
Strand 2	B	647	649	anti-parallel

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There are 11 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	286	295	anti-parallel
Strand 4	C	333	342	anti-parallel
Strand 5	C	367	377	anti-parallel
Strand 6	C	131	140	anti-parallel
Strand 7	C	160	167	anti-parallel
Strand 8	C	184	191	anti-parallel
Strand 9	C	194	201	anti-parallel
Strand 10	C	271	272	anti-parallel
Strand 11	C	286	295	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	653	first strand
Strand 2	C	629	634	parallel
Strand 3	C	602	606	parallel
Strand 4	C	664	667	parallel
Strand 5	C	695	698	parallel
Strand 6	C	718	721	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	647	649	anti-parallel

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There are 11 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	277	280	anti-parallel
Strand 3	D	286	295	anti-parallel
Strand 4	D	333	342	anti-parallel
Strand 5	D	367	377	anti-parallel
Strand 6	D	131	140	anti-parallel
Strand 7	D	160	167	anti-parallel
Strand 8	D	184	191	anti-parallel
Strand 9	D	194	201	anti-parallel
Strand 10	D	271	272	anti-parallel
Strand 11	D	286	295	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	652	653	first strand
Strand 2	D	629	634	parallel
Strand 3	D	602	606	parallel
Strand 4	D	664	667	parallel
Strand 5	D	695	698	parallel
Strand 6	D	718	721	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	639	641	first strand
Strand 2	D	647	649	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GG9

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GG9