Analysis of interatomic Contacts of Structural Units in PDB entry:
1GGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GGM entry

There are 2 chains in PDB entry 1GGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TRP 505
B
 ALA 1TRP 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1GGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 15Right-handed alpha
Helix 2
19
A
23 25Right-handed 310
Helix 3
3
A
36 53Right-handed alpha
Helix 4
21
A
71 76Right-handed alpha
Helix 5
5
A
79 82Right-handed alpha
Helix 6
23
A
179 181Right-handed 310
Helix 7
7
A
190 194Right-handed alpha
Helix 8
8
A
197 204Right-handed alpha
Helix 9
25
A
246 266Right-handed 310
Helix 10
26
A
271 273Right-handed 310
Helix 11
27
A
314 319Right-handed alpha
Helix 12
28
A
364 375Right-handed alpha
Helix 13
29
A
394 396Right-handed 310
Helix 14
30
A
411 427Right-handed alpha
Helix 15
31
A
440 449Right-handed alpha
Helix 16
32
A
460 463Right-handed alpha
Helix 17
33
A
492 502Right-handed alpha
Helix 18
18
B
5 14Right-handed alpha
Helix 19
19
B
23 25Right-handed 310
Helix 20
20
B
36 54Right-handed alpha
Helix 21
21
B
71 76Right-handed alpha
Helix 22
22
B
81 83Right-handed 310
Helix 23
23
B
179 181Right-handed 310
Helix 24
24
B
189 204Right-handed 310
Helix 25
25
B
246 266Right-handed 310
Helix 26
26
B
271 273Right-handed 310
Helix 27
27
B
314 319Right-handed alpha
Helix 28
28
B
364 375Right-handed alpha
Helix 29
29
B
394 396Right-handed 310
Helix 30
30
B
411 427Right-handed alpha
Helix 31
31
B
440 449Right-handed alpha
Helix 32
32
B
460 463Right-handed alpha
Helix 33
33
B
492 502Right-handed alpha
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There are 13 sheets in PDB entry 1GGM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
32 34anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
210 219parallel
Strand 3
A
234 243anti-parallel
Strand 4
A
359 363anti-parallel
Strand 5
A
306 311anti-parallel
Strand 6
A
288 296anti-parallel
Strand 7
A
274 278anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
182 185anti-parallel
Strand 3
A
170 172anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
163 166anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
356 358anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 298first strand
Strand 2
A
301 304anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 435first strand
Strand 2
A
401 405parallel
Strand 3
A
454 458parallel
Strand 4
A
476 481anti-parallel
Strand 5
A
487 491anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
32 34anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
210 219parallel
Strand 3
B
234 243anti-parallel
Strand 4
B
359 363anti-parallel
Strand 5
B
306 311anti-parallel
Strand 6
B
288 296anti-parallel
Strand 7
B
274 278anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
182 185anti-parallel
Strand 3
B
170 172anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 244first strand
Strand 2
B
356 358anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 297first strand
Strand 2
B
302 304anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 435first strand
Strand 2
B
401 405parallel
Strand 3
B
454 458parallel
Strand 4
B
476 481anti-parallel
Strand 5
B
487 491anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il