Analysis of interatomic Contacts of Structural Units in PDB entry:
1GGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GGO entry

There is 1 chain in PDB entry 1GGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 874
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 1GGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
12 14Right-handed 310
Helix 3
3
A
15 20Right-handed alpha
Helix 4
4
A
20 33Right-handed alpha
Helix 5
5
A
44 52Right-handed alpha
Helix 6
6
A
58 76Right-handed alpha
Helix 7
7
A
114 124Right-handed alpha
Helix 8
8
A
125 143Right-handed alpha
Helix 9
9
A
148 161Right-handed alpha
Helix 10
10
A
167 171Right-handed 310
Helix 11
11
A
172 187Right-handed alpha
Helix 12
12
A
199 215Right-handed alpha
Helix 13
13
A
217 227Right-handed alpha
Helix 14
14
A
277 282Right-handed alpha
Helix 15
15
A
293 298Right-handed alpha
Helix 16
16
A
300 316Right-handed alpha
Helix 17
17
A
342 356Right-handed alpha
Helix 18
18
A
360 368Right-handed alpha
Helix 19
19
A
369 371Right-handed 310
Helix 20
20
A
372 377Right-handed alpha
Helix 21
21
A
382 388Right-handed alpha
Helix 22
22
A
410 417Right-handed alpha
Helix 23
23
A
432 434Right-handed 310
Helix 24
24
A
435 441Right-handed alpha
Helix 25
25
A
454 463Right-handed alpha
Helix 26
26
A
518 530Right-handed alpha
Helix 27
27
A
542 551Right-handed alpha
Helix 28
28
A
562 568Right-handed alpha
Helix 29
29
A
571 581Right-handed alpha
Helix 30
30
A
583 593Right-handed alpha
Helix 31
31
A
594 610Right-handed alpha
Helix 32
32
A
622 627Right-handed 310
Helix 33
33
A
630 635Right-handed alpha
Helix 34
34
A
644 656Right-handed alpha
Helix 35
35
A
659 663Right-handed 310
Helix 36
36
A
666 673Right-handed alpha
Helix 37
37
A
673 696Right-handed alpha
Helix 38
38
A
710 729Right-handed alpha
Helix 39
39
A
746 752Right-handed alpha
Helix 40
40
A
752 760Right-handed alpha
Helix 41
41
A
766 776Right-handed alpha
Helix 42
42
A
778 792Right-handed alpha
Helix 43
43
A
807 822Right-handed alpha
Helix 44
44
A
833 836Right-handed 310
Helix 45
45
A
837 848Right-handed alpha
Helix 46
46
A
855 857Right-handed 310
Helix 47
47
A
858 874Right-handed alpha
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There are 7 sheets in PDB entry 1GGO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
235 241anti-parallel
Strand 4
A
89 95anti-parallel
Strand 5
A
105 109anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
86 87parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
266 274anti-parallel
Strand 3
A
252 259anti-parallel
Strand 4
A
321 327anti-parallel
Strand 5
A
330 335anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
502 504anti-parallel
Strand 3
A
494 497anti-parallel
Strand 4
A
403 408anti-parallel
Strand 5
A
424 428parallel
Strand 6
A
444 447parallel
Strand 7
A
466 469parallel
Strand 8
A
396 399anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 477first strand
Strand 2
A
482 485anti-parallel
Strand 3
A
488 490anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 538first strand
Strand 2
A
851 854parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 561first strand
Strand 2
A
614 617parallel
Strand 3
A
702 705parallel
Strand 4
A
739 744parallel
Strand 5
A
762 765parallel
Strand 6
A
827 830parallel
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