Analysis of interatomic Contacts of Structural Units in PDB entry:
1GGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GGV entry

There are 2 chains in PDB entry 1GGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 122
A
 LEU 124GLN 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1GGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 54Right-handed alpha
Helix 2
2
A
62 67Right-handed 310
Helix 3
3
A
77 91Right-handed alpha
Helix 4
4
A
92 109Right-handed alpha
Helix 5
5
A
124 136Right-handed alpha
Helix 6
6
A
148 153Right-handed 310
Helix 7
7
A
152 159Right-handed 310
Helix 8
8
A
175 189Right-handed alpha
Helix 9
9
A
213 229Right-handed alpha
Helix 10
10
A
230 232Right-handed 310
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There is 1 sheet ( B) in PDB entry 1GGV.

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
28 34first strand
Strand 3
A
57 61first strand
Strand 4
A
113 122first strand
Strand 5
A
140 144first strand
Strand 6
A
163 168first strand
Strand 7
A
192 197first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il