Analysis of interatomic Contacts of Structural Units in PDB entry:
1GHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GHE entry

There are 2 chains in PDB entry 1GHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4LEU 173
B
 HIS 3LEU 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1GHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 31Right-handed alpha
Helix 2
2
A
42 52Right-handed alpha
Helix 3
3
A
53 60Right-handed alpha
Helix 4
4
A
100 103Right-handed 310
Helix 5
5
A
106 122Right-handed alpha
Helix 6
6
A
135 144Right-handed alpha
Helix 7
7
B
13 31Right-handed alpha
Helix 8
8
B
42 59Right-handed alpha
Helix 9
9
B
100 103Right-handed 310
Helix 10
10
B
106 122Right-handed alpha
Helix 11
11
B
135 144Right-handed alpha
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There are 2 sheets in PDB entry 1GHE. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
72 81anti-parallel
Strand 4
A
90 98anti-parallel
Strand 5
A
126 132parallel
Strand 6
A
163 172anti-parallel
Strand 7
A
147 157anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
62 69anti-parallel
Strand 3
B
72 81anti-parallel
Strand 4
B
90 98anti-parallel
Strand 5
B
126 132parallel
Strand 6
B
163 172anti-parallel
Strand 7
B
147 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il