Analysis of interatomic Contacts of Structural Units in PDB entry:
1GHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GHF entry

There are 2 chains in PDB entry 1GHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ASP 1ARG 211
H
 VAL 1ILE 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1GHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
122 125Right-handed alpha
Helix 2
2
L
183 186Right-handed alpha
Helix 3
3
H
28 30Right-handed 310
Helix 4
4
H
73 75Right-handed 310
Helix 5
5
H
87 89Right-handed 310
Helix 6
6
H
157 159Right-handed 310
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There are 9 sheets in PDB entry 1GHF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 106parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 67anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
85 90first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
44 48anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
131 139anti-parallel
Strand 3
L
173 180anti-parallel
Strand 4
L
160 163anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
144 148first strand
Strand 2
L
193 198anti-parallel
Strand 3
L
205 208anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 11first strand
Strand 2
H
109 113parallel
Strand 3
H
91 97anti-parallel
Strand 4
H
33 38anti-parallel
Strand 5
H
44 50anti-parallel
Strand 6
H
57 59anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
17 22first strand
Strand 2
H
77 82anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
122 126first strand
Strand 2
H
137 147anti-parallel
Strand 3
H
176 186anti-parallel
Strand 4
H
171 173anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
152 156first strand
Strand 2
H
196 201anti-parallel
Strand 3
H
206 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il