Analysis of interatomic Contacts of Structural Units in PDB entry:
1GIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GIG entry

There are 2 chains in PDB entry 1GIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLN 1SER 210
H
 GLN 1PRO 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1GIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
30 34Right-handed 310
Helix 2
2
L
81 85Right-handed 310
Helix 3
3
L
124 130Right-handed alpha
Helix 4
4
L
185 191Right-handed alpha
Helix 5
5
H
86 90Right-handed 310
Helix 6
6
H
209 212Right-handed 310
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There are 12 sheets in PDB entry 1GIG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
17 24anti-parallel
Strand 3
L
72 78anti-parallel
Strand 4
L
64 69anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
55 56first strand
Strand 2
L
45 51anti-parallel
Strand 3
L
36 41anti-parallel
Strand 4
L
86 93anti-parallel
Strand 5
L
98 100anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
55 56first strand
Strand 2
L
45 51anti-parallel
Strand 3
L
36 41anti-parallel
Strand 4
L
86 93anti-parallel
Strand 5
L
104 108anti-parallel
Strand 6
L
9 12parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
132 142anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
162 164anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
132 142anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
168 169anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
156 157first strand
Strand 2
L
148 153anti-parallel
Strand 3
L
194 200anti-parallel
Strand 4
L
203 209anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
46 51anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
91 99anti-parallel
Strand 5
H
108 112anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
57 59first strand
Strand 2
H
46 51anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
91 99anti-parallel
Strand 5
H
116 120anti-parallel
Strand 6
H
11 12parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
129 133first strand
Strand 2
H
144 154anti-parallel
Strand 3
H
184 193anti-parallel
Strand 4
H
172 174anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
129 133first strand
Strand 2
H
144 154anti-parallel
Strand 3
H
184 193anti-parallel
Strand 4
H
178 179anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
160 163first strand
Strand 2
H
202 208anti-parallel
Strand 3
H
213 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il