Analysis of interatomic Contacts of Structural Units in PDB entry:
1GIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GIN entry

There is 1 chain in PDB entry 1GIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ALA 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1GIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
16 26Right-handed alpha
Helix 2
H1'
A
57 60Right-handed 310
Helix 3
H2
A
76 88Right-handed alpha
Helix 4
H2'
A
92 96Right-handed 310
Helix 5
H3
A
108 120Right-handed alpha
Helix 6
H4
A
133 142Right-handed alpha
Helix 7
H5'
A
148 152Right-handed 310
Helix 8
H5
A
154 176Right-handed alpha
Helix 9
H6
A
183 199Right-handed alpha
Helix 10
H7
A
204 213Right-handed alpha
Helix 11
H8
A
245 252Right-handed alpha
Helix 12
H9
A
285 293Right-handed alpha
Helix 13
H10
A
312 322Right-handed alpha
Helix 14
10'
A
332 335Right-handed 310
Helix 15
H11
A
393 406Right-handed alpha
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There are 4 sheets in PDB entry 1GIN. Click on sheet of interest to get list of strands forming it: B1, B2, B3, B4,

There are 10 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
97 99parallel
Strand 3
A
65 69parallel
Strand 4
A
28 32parallel
Strand 5
A
217 222parallel
Strand 6
A
2 7parallel
Strand 7
A
261 268parallel
Strand 8
A
325 330parallel
Strand 9
A
411 413parallel
Strand 10
A
423 425anti-parallel
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There are 2 strands in B2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
48 53anti-parallel
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There are 2 strands in B3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
270 272anti-parallel
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There are 3 strands in B4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 378first strand
Strand 2
A
337 349anti-parallel
Strand 3
A
354 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il