Analysis of interatomic Contacts of Structural Units in PDB entry:
1GIQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GIQ entry

There are 2 chains in PDB entry 1GIQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ASN 413
B
 ILE 1003ASN 1413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1GIQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 29Right-handed alpha
Helix 2
2
A
32 43Right-handed alpha
Helix 3
3
A
45 56Right-handed alpha
Helix 4
4
A
57 59Right-handed 310
Helix 5
5
A
60 67Right-handed alpha
Helix 6
6
A
67 83Right-handed alpha
Helix 7
7
A
96 101Right-handed 310
Helix 8
8
A
115 126Right-handed alpha
Helix 9
9
A
216 229Right-handed alpha
Helix 10
10
A
231 235Right-handed 310
Helix 11
11
A
236 248Right-handed alpha
Helix 12
12
A
250 260Right-handed alpha
Helix 13
13
A
261 265Right-handed 310
Helix 14
14
A
268 283Right-handed alpha
Helix 15
15
A
298 303Right-handed 310
Helix 16
16
A
308 312Right-handed 310
Helix 17
17
A
315 327Right-handed alpha
Helix 18
18
A
370 372Right-handed 310
Helix 19
19
B
1012 1029Right-handed alpha
Helix 20
20
B
1032 1043Right-handed alpha
Helix 21
21
B
1045 1056Right-handed alpha
Helix 22
22
B
1057 1059Right-handed 310
Helix 23
23
B
1060 1067Right-handed alpha
Helix 24
24
B
1067 1083Right-handed alpha
Helix 25
25
B
1096 1101Right-handed 310
Helix 26
26
B
1115 1126Right-handed alpha
Helix 27
27
B
1216 1229Right-handed alpha
Helix 28
28
B
1231 1235Right-handed 310
Helix 29
29
B
1236 1248Right-handed alpha
Helix 30
30
B
1250 1260Right-handed alpha
Helix 31
31
B
1261 1265Right-handed 310
Helix 32
32
B
1268 1283Right-handed alpha
Helix 33
33
B
1298 1303Right-handed 310
Helix 34
34
B
1308 1312Right-handed 310
Helix 35
35
B
1315 1327Right-handed alpha
Helix 36
36
B
1370 1372Right-handed 310
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There are 8 sheets in PDB entry 1GIQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 95first strand
Strand 2
A
154 160anti-parallel
Strand 3
A
198 208parallel
Strand 4
A
175 195anti-parallel
Strand 5
A
130 139anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 95first strand
Strand 2
A
154 160anti-parallel
Strand 3
A
198 208parallel
Strand 4
A
175 195anti-parallel
Strand 5
A
167 170anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 297first strand
Strand 2
A
354 360anti-parallel
Strand 3
A
402 411parallel
Strand 4
A
387 399anti-parallel
Strand 5
A
330 333anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
380 383anti-parallel
Strand 3
A
367 368anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1089 1094first strand
Strand 2
B
1154 1160anti-parallel
Strand 3
B
1198 1208parallel
Strand 4
B
1175 1195anti-parallel
Strand 5
B
1130 1139anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1089 1094first strand
Strand 2
B
1154 1160anti-parallel
Strand 3
B
1198 1208parallel
Strand 4
B
1175 1195anti-parallel
Strand 5
B
1167 1170anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1291 1297first strand
Strand 2
B
1354 1360anti-parallel
Strand 3
B
1402 1411parallel
Strand 4
B
1387 1399anti-parallel
Strand 5
B
1330 1333anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1337 1340first strand
Strand 2
B
1380 1383anti-parallel
Strand 3
B
1367 1368anti-parallel
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